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Flexible Jekyll theme using bootstrap 5 as CSS framework.

Home Page: https://elixir-belgium.github.io/elixir-toolkit-theme/

License: MIT License

Ruby 0.25% HTML 24.11% SCSS 67.82% CSS 0.61% JavaScript 6.96% Python 0.25%

github-pages jekyll jekyll-template jekyll-theme ruby-gem

elixir-toolkit-theme's People

Contributors

Stargazers

Watchers

Forkers

fbacall ac812 mshadbolt janslifka mareksuchanek rabuono nsunami stain rajxir bedroesb mivux unode

elixir-toolkit-theme's Issues

Events improvements needed

CSS for lists in the description is not selective enough
Option for collapsible descriptions would be usefull

Backwards compatibility if new theme variables are added

Jekyll complains if variables are used that are not declared in the repo making use of the remote theme.

Add path param to news and events include

If the news and events page is served on a different url than /news.html and //events.html, the links don't work

Align metadata fields in main tools table with national resource pages

National resource pages do not support linking to TeSS, Bio.tools and FAIRsharing
Main tools table does not support instance_of and how_to_access

Fill in keywords metadata with other info if related pages are not given

jekyll version dependency upgrade? (current clash with jekyll-scholar)

Hiya

I asked recently about whether there is any advice on using academic citations with the theme. Bert directed me to jekyll-scholar which I was excited to try but unfortunately when I try to set it up, the theme and the plugin have conflicting jekyll dependencies:

Bundler could not find compatible versions for gem "jekyll":
  In Gemfile:
    elixir-toolkit-theme was resolved to 1.20.2, which depends on
      jekyll (~> 3.9)

    jekyll-scholar was resolved to 7.1.1, which depends on
      jekyll (~> 4.0)

I was wondering if there is any plan to upgrade the dependency for the them to the next major version?

Thanks

Configuring image name for main-logo

Hi there,

Thanks for the cool theme

I wanted to check whether it is possible to configure the filename that is used for the main_logo image? It seems like at the moment it is hard coded to be /REPO_NAME/assets/img/main_logo.svg, however I'd like to use a png so this doesn't work. Let me know if there is a way to configure it in the _config.yml for example.

A side question is whether there is a way you'd like it acknowledged that we are using this theme at all?

Thanks!

GitHub as registry

Create layout for landingpage

There is an increasing interest for the reuse of the RDMkit landing page. I could be possible to add a custom layout that builds this similar landing page automatically by adding the layout:landingpage attribute to the metadata of the page.

Replace sidebar dependency navgoco with Bootstrap elements

It should be possible to implement the sidebar using collapse/accordion elements in bootstrap. The difficult part will be to detect when a child is the active page so the parent objects expand

Allow contributor carousel to show contributors of a specific role

Currently one has to list contributors separately.

Markdown table is not responsive

When table is given using markdown, the correct classes are not added to make it responsive

Add tooltip to contributor crown badge

Add param to section-navigation-tiles-simple include to exclude certain pages

Feature request

Give users the option to deny cookies

Github placeholder when no Github account is linked, confusing?

Contributors on a page are linked to github using the CONTRIBUTORS.yml file, if not, a github placeholder is used

Display affiliations on page level

Affiliations in the page metadata are currently only used to filter on or to display in the section overview tiles. It might be nice to visualize these affiliation in a similar way we visualize the contributors.

Add ETT logo in footer as part of branding

Getting rid of Gemfile and Gemfile.lock

Normally the repositories that make use of a remote theme, don't need Gemfiles.

Empty tools table bug

When no tool stable is given, but a page links to DSW, an empty Tools and resources table is listed at the bottom of the page

Removing extra whitespace when the content is less than the viewpoint's height

I noticed that the page content is set to render at minimum 100% vh, which results in extra whitespace when the content is shorter than the window height.

My suggestion is to the body as a flex layout with min-vh-100, then allowing the page content container to grow. (PR coming soon)

Adding support for titles in footer

History and open issue button needs to be aligned with custom edit-me path if specified

Using a Google analytics alternative

Adding support for https://plausible.io/

Some images in the affiliation tiles are not appearing

Set width to 100% of img to fix this

keywords metadata html wrong comma placement

Website title Index page

Index page can now contain a duplicate like How-to-Guides | How-to-Guides.

Exception for the title if the url is /

Getting sub-section links to work

Hi there, thanks for the super cool theme!

I have just started building a website that I am adapting from https://github.com/elixir-europe/infectious-diseases-toolkit . I am trying to have sub-section URLs but I can't seem to get the urls working properly.

for example, I would like each sub-item under the about sidebar to have a url like about/contributors and for the pages in the legal ethical section to have urls such as legal_ethical/australian_legal etc. so I attempted to specify these in the relevant sidebar yamls. I noticed in the infectious disease toolbox that there is a trailing slash on the section url, but when I do this I get 404 errors for those urls. If I don't specify the slash, the main section link works,
e.g. https://australianbiocommons.github.io/human-omics-data-sharing-field-guide/data_standards
but the sublinks do not work
e.g. https://australianbiocommons.github.io/human-omics-data-sharing-field-guide/data_standards/ga4gh
but the link without the sublink does work
e.g. https://australianbiocommons.github.io/human-omics-data-sharing-field-guide/ga4gh

I'd like to take advantage of the navigation tiles within the main page within each section thus why I'd like them to be subitems.

I am not sure whether I also need to add each section to the defaults section of the config.yml? I haven't really understood what these scope snippets are for as yet.

I am sure I am probably missing something silly so any guidance you can offer would be much appreciated.

Many thanks!

Add support for Read next, Read previous buttons

These buttons would be generated using the sidebar yaml

Random error, is gone when rebuild

  Conversion error: Jekyll::Converters::Scss encountered an error while converting 'assets/css/main.scss':
                    nil can't be coerced into Integer
jekyll 3.9.0 | Error:  nil can't be coerced into Integer
Traceback (most recent call last):
        100: from /home/bedro/gems/bin/jekyll:23:in `<main>'
         99: from /home/bedro/gems/bin/jekyll:23:in `load'
         98: from /home/bedro/gems/gems/jekyll-3.9.0/exe/jekyll:15:in `<top (required)>'
         97: from /home/bedro/gems/gems/mercenary-0.3.6/lib/mercenary.rb:19:in `program'
         96: from /home/bedro/gems/gems/mercenary-0.3.6/lib/mercenary/program.rb:42:in `go'
         95: from /home/bedro/gems/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `execute'
         94: from /home/bedro/gems/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `each'
         93: from /home/bedro/gems/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `block in execute'
         92: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/serve.rb:75:in `block (2 levels) in init_with_program'
         91: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/serve.rb:93:in `start'
         90: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/serve.rb:93:in `each'
         89: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/serve.rb:93:in `block in start'
         88: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/build.rb:36:in `process'
         87: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/commands/build.rb:65:in `build'
         86: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/command.rb:28:in `process_site'
         85: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:71:in `process'
         84: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:192:in `render'
         83: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:471:in `render_pages'
         82: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:471:in `each'
         81: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:472:in `block in render_pages'
         80: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/site.rb:479:in `render_regenerated'
         79: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:62:in `run'
         78: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:83:in `render_document'
         77: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:99:in `convert'
         76: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:99:in `reduce'
         75: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:99:in `each'
         74: from /home/bedro/gems/gems/jekyll-3.9.0/lib/jekyll/renderer.rb:101:in `block in convert'
         73: from /home/bedro/gems/gems/jekyll-sass-converter-1.5.2/lib/jekyll/converters/scss.rb:119:in `convert'
         72: from /home/bedro/gems/gems/sass-3.7.4/lib/sass.rb:57:in `compile'
         71: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/engine.rb:290:in `render'
         70: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/root_node.rb:20:in `render'
         69: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/root_node.rb:36:in `css_tree'
         68: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:10:in `visit'
         67: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:157:in `visit'
         66: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:36:in `visit'
         65: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:186:in `visit_root'
         64: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:36:in `block in visit'
         63: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:166:in `visit_children'
         62: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:179:in `with_environment'
         61: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:167:in `block in visit_children'
         60: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:52:in `visit_children'
         59: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:52:in `map'
         58: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:52:in `block in visit_children'
         57: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `visit'
         56: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `with_base'
         55: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:135:in `with_frame'
         54: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `block in with_base'
         53: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `block in visit'
         52: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:36:in `visit'
         51: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:322:in `visit_import'
         50: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:88:in `with_import'
         49: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:135:in `with_frame'
         48: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:88:in `block in with_import'
         47: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `block in visit_import'
         46: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `map'
         45: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `block (2 levels) in visit_import'
         44: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `visit'
         43: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `with_base'
         42: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:135:in `with_frame'
         41: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `block in with_base'
         40: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `block in visit'
         39: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:36:in `visit'
         38: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:322:in `visit_import'
         37: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:88:in `with_import'
         36: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:135:in `with_frame'
         35: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:88:in `block in with_import'
         34: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `block in visit_import'
         33: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `map'
         32: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:325:in `block (2 levels) in visit_import'
         31: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `visit'
         30: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `with_base'
         29: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:135:in `with_frame'
         28: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/stack.rb:79:in `block in with_base'
         27: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:158:in `block in visit'
         26: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/base.rb:36:in `visit'
         25: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/tree/visitors/perform.rb:478:in `visit_variable'
         24: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/node.rb:50:in `perform'
         23: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `_perform'
         22: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `map'
         21: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `each'
         20: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `each_with_index'
         19: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `each'
         18: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:129:in `block in _perform'
         17: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/funcall.rb:182:in `perform_arg'
         16: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/node.rb:50:in `perform'
         15: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `_perform'
         14: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `map'
         13: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:53:in `block in _perform'
         12: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/node.rb:50:in `perform'
         11: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `_perform'
         10: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `map'
          9: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:53:in `block in _perform'
          8: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/node.rb:50:in `perform'
          7: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `_perform'
          6: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:52:in `map'
          5: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/tree/map_literal.rb:54:in `block in _perform'
          4: from /usr/lib/ruby/2.7.0/set.rb:244:in `include?'
          3: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/value/number.rb:226:in `eql?'
          2: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/value/number.rb:403:in `basically_equal?'
          1: from /home/bedro/gems/gems/sass-3.7.4/lib/sass/script/value/number.rb:409:in `basically_equal?'
/home/bedro/gems/gems/sass-3.7.4/lib/sass/script/value/number.rb:409:in `-': nil can't be coerced into Integer (TypeError)

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