ebi-gene-expression-group,EBI Gene Expression Group,github

A stand alone tool for conversion of HCA metadata for single cell experiments to MAGE-TAB ready for ingestion to the SCEA.

Highcharts heatmap used to visualise marker genes for Single Cell Expression Atlas

Repository for providing useful plots in Single-cell Expression Atlas workflows

The SCXA smart-seq quantification workflow

t-SNE plot widget to visualise Single Cell Expression Atlas data

Higher level repo for aggregating all of Atlas workflow logic for Single Cell

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

Command Line Interface scripts for the singleCellNet tool

Comparison of Mapping rates for snRNA-Seq datasets with or without introns in reference and different mapping tools

Scripts to create and manage Solr collections used by (bulk) Expression Atlas

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Web app to retrieve flat file information from the BioStudies API

An interface for browsing the ArrayExpress submissions tracking database

Documentation associated with our project to generate tertiary workflow components for single-cell RNA-seq

Tool Shed repositories maintained by the Intergalactic Utilities Commission

Wrapper scripts for functions of the tximport Bioconductor package

UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)

ArrayExpress USI metadata schemas and scripts for handling USI JSON metadata

Running logic for the indexing tasks for Bulk Expression Atlas

An R package to contain accessory functions for packages defining wrapper scripts for workflows related to single-cell analysis.

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