ebi-gene-expression-group Goto Github PK

anatomical-systems-mapping

Atlas metadata and ontology mappings

anatomogram

Anatomogram illustrating Expression Atlas experiments

annotare-help

Help pages for functional genomics submissions

ap-analysis

Atlas Prod Analysis submodule

ap-bundle-maker

Creates bundles for AtlasProd pipelines

atlas

Expression Atlas

atlas-analysis

Scripts used in Atlas analysis pipelines

atlas-anndata

Tools for anndata generation/ consumption for Expression Atlas

atlas-annotations

The pipeline producing bioentity annotations used in Expression Atlas searches

atlas-annotations-ensembl

Ensembl annotations for Atlas

atlas-baseline-meta-analysis

Atlas baseline meta-analysis

atlas-bash-util

atlas-bioentity-information

Gene bioentity information

atlas-bulk-baseline-ot-export-wf

New baseline export for Open Targets (although it is meant as a general purpose export)

atlas-cell-type-heatmap

atlas-cell-type-wheel

atlas-components

Front end components of Expression Atlas and Single Cell Expression Atlas

atlas-conda

Internal conda recipes relevant for atlas but not of general interest to be in bioconda

atlas-containers

Common location to place our container definitions for integration with CI processes.

atlas-data-import

atlas-deconvolution-references

Generate single-cell reference dataset for deconvolution in Atlas

atlas-experiment

Experiment page for bulk Expression Atlas

atlas-experiment-table

atlas-faqs

This is the repo containing FAQs for both bulk and single cell expression atlas

atlas-fastq-provider

Scripts and utilities for providing fastqs to workflows

atlas-gene-annotation-manipulation

Scripts for processing gene (or exon/ transcript) annotation

atlas-gtex-bulk

Atlas analysis for controlled-access GTEx bulk datasets

atlas-heatmap

Heatmap visualizing bulk Expression Atlas data

atlas-help-pages

atlas-homepage-cards

A React component that renders grids of cards containing images and links