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Home Page: https://github.com/DrB-S/HeatCluster
License: GNU General Public License v3.0
Creates a heat map with an accompanying cluster map for a SNP matrix
Home Page: https://github.com/DrB-S/HeatCluster
License: GNU General Public License v3.0
I don't think this is an error, but I wanted to let you know that there's a DepreciationWarning with heatcluster due to pandas' new dependency.
heatcluster.py --help
/heatcluster/heatcluster.py:13: DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
usage: heatcluster.py [-h] [-i INPUT] [-o OUT] [-t TYPE] [-v]
options:
-h, --help show this help message and exit
-i INPUT, --input INPUT
input SNP matrix file name
-o OUT, --out OUT final file name
-t TYPE, --type TYPE file extension for final image
-v, --version print version and exit
It looks like some of the text autocorrection is off, especially for large matrices.
I was made aware of this in this issue : UPHL-BioNGS/Grandeur#154
Could this sorted matrix be output as a .csv
This sounds like something that would be "easy" to implement. Can I also request this as a feature?
Something like
df.to_csv(sorted_matrix.csv, index=False)
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