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dongxiaomai's Projects

fastp icon fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

gatk icon gatk

Official code repository for GATK versions 4 and up

genefuse icon genefuse

Gene fusion detection and visualization

lancet icon lancet

Microassembly based somatic variant caller for NGS data

models icon models

Models and examples built with TensorFlow

msisensor icon msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

mutscan icon mutscan

Detect and visualize target mutations by scanning FastQ files directly

strelka icon strelka

Strelka2 germline and somatic small variant caller

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