djgroen / fabparticleda Goto Github PK
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License: BSD 3-Clause "New" or "Revised" License
FabSim3 plugin for ParticleDA.jl
License: BSD 3-Clause "New" or "Revised" License
As reported by James Cook :).
I'm just reviewing your FabParticleDA work for the Excalibur deliverable. I'm having a problem running the community_models
though. Everything installed as expected, so I can run fabsim -l machines
and get an output. The problem comes when trying to run the community_models where it appears to delete a file before trying to copy it (error preceded by evidence that fabsim is installed correctly). Is there a problem with my set up or is the problem something else? I've tried running specific community_models by ... :model=foo but the same problem arose.
(.venv) ┌─03-Apr 13:36:06 cookj ~/code/FabSim3 [master*]
└─$fabsim -l machines
[loading plugin] FabParticleDA ...
List of available remote machines
╭─────────────────────┬────────────────────────────────────────╮
│ remote machine name │ remote machine address │
├─────────────────────┼────────────────────────────────────────┤
│ cartesius │ cartesius.surfsara.nl │
│ prometheus │ prometheus.cyfronet.pl │
│ cirrus │ login.cirrus.ac.uk │
│ supermuc2 │ hw.supermuc.lrz.de │
│ ohm │ ohm.chem.ucl.ac.uk │
│ Kathleen │ kathleen-hpc-prod-10-313.gtm.ucl.ac.uk │
│ bluejoule │ login.joule.hartree.stfc.ac.uk │
│ bluewonder2 │ phase2.wonder.hartree.stfc.ac.uk │
│ oppenheimer │ oppenheimer.chem.ucl.ac.uk │
│ localhost │ localhost │
│ qcg │ eagle.man.poznan.pl │
│ eagle_vecma │ eagle.man.poznan.pl │
│ eagle_hidalgo │ eagle.man.poznan.pl │
│ eagle_seavea │ eagle.man.poznan.pl │
│ supermuc_vecma │ skx.supermuc.lrz.de │
│ training_hidalgo │ 62.3.171.192 │
│ archer2 │ archer2 │
│ marenostrum4 │ mn1.bsc.es │
│ piz_daint │ daint.cscs.ch │
│ monsoonfab │ “monsoonfab” │
╰─────────────────────┴────────────────────────────────────────╯
[ 0s444 | Apr 03 01:36pm ]
(.venv) ┌─03-Apr 13:36:14 cookj ~/code/FabSim3 [master*]
└─$cd ../FabParticleDA/
[ 0s003 | Apr 03 01:36pm ]
(.venv) ┌─03-Apr 13:36:22 cookj ~/code/FabParticleDA [master]
└─$git status
On branch master
Your branch is up-to-date with 'origin/master'.
nothing to commit, working tree clean
[ 0s019 | Apr 03 01:36pm ]
(.venv) ┌─03-Apr 13:36:26 cookj ~/code/FabParticleDA [master]
└─$fabsim localhost test_community_model
[loading plugin] FabParticleDA ...
[Executing task] test_community_model
[local] rm community_models/llw2d.jl
[local] cp community_models/llw2d.jl /home/cookj/code/FabSim3/plugins/FabParticleDA/config_files/ParticleDA_test
cp: cannot stat 'community_models/llw2d.jl': No such file or directory
Traceback (most recent call last):
File "/home/cookj/code/FabSim3/fabsim/bin/fabsim", line 46, in
sys.exit(fabsim_main.main())
File "/home/cookj/code/FabSim3/fabsim/base/fabsim_main.py", line 157, in main
env.exec_func(*env.task_args, **env.task_kwargs)
File "/home/cookj/code/FabSim3/fabsim/base/decorators.py", line 74, in wrapper
return func(*args, **kwargs)
File "/home/cookj/code/FabSim3/plugins/FabParticleDA/FabParticleDA.py", line 35, in test_community_model
local("cp community_models/{} {}".format(model,path_to_config))
File "<@beartype(fabsim.base.networks.local) at 0x7f066aac8160>", line 54, in local
File "/home/cookj/code/FabSim3/fabsim/base/networks.py", line 59, in local
raise RuntimeError(
RuntimeError:
local() encountered an error (return code 1)while executing 'cp community_models/llw2d.jl /home/cookj/code/FabSim3/plugins/FabParticleDA/config_files/ParticleDA_test'
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