djgroen / covid19-preprocess Goto Github PK

I went through the slides and was trying to follow the steps. However, there seems to be an error which I am unable to fix when I run the 'extract_*.py' files. The error is as follows:

Traceback (most recent call last):
File "extract_hospitals.py", line 25, in
extract_hospitals(tree)
File "extract_hospitals.py", line 15, in extract_hospitals
print("hospital,{},{},{}".format(p.centroid.x, p.centroid.y, int(calc_geom_area(p))))
File "/home/arindam/Dropbox/Brunel/FACS/PreProcessing/covid19-preprocess/parse_osm.py", line 58, in calc_geom_area
pyproj.Proj('EPSG:4326'),
File "/home/arindam/anaconda3/lib/python3.8/site-packages/pyproj/init.py", line 362, in new
return _proj.Proj.new(self, projstring)
File "_proj.pyx", line 129, in _proj.Proj.cinit
RuntimeError: b'projection not named'

Could someone in the group help me with that?

I have downloaded an OSM map (a .osm file) for a region near my home in Croydon. I was trying to extract the houses, hospitals, parks etc. from the map in order to pre-process the data for FACS simulation. So I ran

python3 extract_hospitals.py maps/home.osm

I am running Python 3.8.8 on Ubuntu 20.04. The list of installed packages I have is attached.

---> Solution shown to work: (by Imran)

From the error you mentioned, it seems your pyproj package is not correctly installed or using the wrong version. Could you update it?