dingwb / pycistarget Goto Github PK

pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.

To install pycistarget:

pip install git+https://github.com/DingWB/pycistarget.git

To check your pycistarget version:

import pycistarget
pycistarget.__version__

Tutorial and documentation are available at https://pycistarget.readthedocs.io/.

• If you have technical questions or problems, such as bug reports or ideas for new features, please open an issue under the issues tab.
• If you have questions about the interpretation of results or your analysis, please start a Discussion under the Discussions tab.

Bravo Gonzalez-Blas, C. & De Winter, S. et al. (2022). SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks