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View Code? Open in Web Editor NEWSingle Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)
Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)
Hi and thanks for the great package!
I would like to lift the munkres dep on the package to make it easier to install. The hungarian algorithm is usedonly once
scimitar/scimitar/model_comparisons.py
Line 19 in c7a4a0b
for idx1, idx2 in zip(scipy.optimize.linear_sum_assignment(state_dist_matrix)):
Moreover, you don't need to make a list anymore, making it faster. Would you accept a PR for changing this line? I can write one overnight!
Thanks!
Fabio
Hello hello,
Interesting package. What's your recommendation for running it? Seems not to have python 3 support (though pyroconductor does now). If I'm doing a new conda environment, which python version is best to use?
-Josh
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