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eriszhang mit-gfx itsvismay winteralexander abhimadan h00shi stevezhao13 honglin-c paulkry glazfu alexandremercieraubin peterzhousz jackzhousz liudeke

bartels's Issues

Documentation on the Name Etymology

Could you please add some additional documentation on the origin of the name of the library. I did some googling, and I figure it must refer to Michael Bartels, the German FIA GT championship winning racing driver, but some clear documentation in the readme would be helpful, and may save others a google in the future :).

Allow floats to be used

Due to this function, Bartels only works with doubles (note the Eigen::MatrixXd):

Bartels/src/eval_at_point.cpp

Line 8 in 41bcdec

    
           void sim::eval_at_point(Eigen::MatrixXx<DerivedRet> &results, const Eigen::MatrixXd &V, Eigen::Ref<const Eigen::MatrixXi> E,

CMake cannot find Matlab R2020a

Terminal output:

"C:\Program Files\CMake\bin\cmake.exe" -DCMAKE_BUILD_TYPE=Debug -G "CodeBlocks - MinGW Makefiles" "C:\Users\Alexander Winter\MATLAB Drive\computer-animation-nserc\Bartels\matlab"
-- Creating target: igl::core (igl)
CMake Error at C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/cmake/FindPackageHandleStandardArgs.cmake:164 (message):
  Could NOT find Matlab (missing: Matlab_MEX_LIBRARY Matlab_MX_LIBRARY)
  (found version "unknown")
Call Stack (most recent call first):
  C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/cmake/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
  C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/cmake/FindMatlab.cmake:1802 (find_package_handle_standard_args)
  CMakeLists.txt:24 (find_package)


-- Configuring incomplete, errors occurred!
See also "C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeOutput.log".
See also "C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeError.log".

[Finished]

CMakeError.log

Determining if the include file pthread.h exists failed with the following output:
Change Dir: C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp

Run Build Command(s):C:/MinGW/bin/mingw32-make.exe cmTC_68cbc/fast && C:/MinGW/bin/mingw32-make.exe  -f CMakeFiles\cmTC_68cbc.dir\build.make CMakeFiles/cmTC_68cbc.dir/build

mingw32-make.exe[1]: Entering directory 'C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp'

Building C object CMakeFiles/cmTC_68cbc.dir/CheckIncludeFile.c.obj

C:\MinGW\bin\gcc.exe    -o CMakeFiles\cmTC_68cbc.dir\CheckIncludeFile.c.obj   -c "C:\Users\Alexander Winter\MATLAB Drive\computer-animation-nserc\Bartels\matlab\cmake-build-debug\CMakeFiles\CMakeTmp\CheckIncludeFile.c"

C:\Users\Alexander Winter\MATLAB Drive\computer-animation-nserc\Bartels\matlab\cmake-build-debug\CMakeFiles\CMakeTmp\CheckIncludeFile.c:1:21: fatal error: pthread.h: No such file or directory

 #include <pthread.h>

                     ^

compilation terminated.

CMakeFiles\cmTC_68cbc.dir\build.make:84: recipe for target 'CMakeFiles/cmTC_68cbc.dir/CheckIncludeFile.c.obj' failed

mingw32-make.exe[1]: *** [CMakeFiles/cmTC_68cbc.dir/CheckIncludeFile.c.obj] Error 1

mingw32-make.exe[1]: Leaving directory 'C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp'

Makefile:140: recipe for target 'cmTC_68cbc/fast' failed

mingw32-make.exe: *** [cmTC_68cbc/fast] Error 2

CMakeOutput.log

The system is: Windows - 6.1.7601 - AMD64
Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: C:/MinGW/bin/gcc.exe 
Build flags: 
Id flags:  

The output was:
0


Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.exe"

The C compiler identification is GNU, found in "C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/3.17.2/CompilerIdC/a.exe"

Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: C:/MinGW/bin/g++.exe 
Build flags: 
Id flags:  

The output was:
0


Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.exe"

The CXX compiler identification is GNU, found in "C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/3.17.2/CompilerIdCXX/a.exe"

Determining if the C compiler works passed with the following output:
Change Dir: C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp

Run Build Command(s):C:/MinGW/bin/mingw32-make.exe cmTC_4233b/fast && C:/MinGW/bin/mingw32-make.exe  -f CMakeFiles\cmTC_4233b.dir\build.make CMakeFiles/cmTC_4233b.dir/build

mingw32-make.exe[1]: Entering directory 'C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp'

Building C object CMakeFiles/cmTC_4233b.dir/testCCompiler.c.obj

C:\MinGW\bin\gcc.exe    -o CMakeFiles\cmTC_4233b.dir\testCCompiler.c.obj   -c "C:\Users\Alexander Winter\MATLAB Drive\computer-animation-nserc\Bartels\matlab\cmake-build-debug\CMakeFiles\CMakeTmp\testCCompiler.c"

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mingw32-make.exe[1]: Leaving directory 'C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp'




Detecting C compiler ABI info compiled with the following output:
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mingw32-make.exe[1]: Entering directory 'C:/Users/Alexander Winter/MATLAB Drive/computer-animation-nserc/Bartels/matlab/cmake-build-debug/CMakeFiles/CMakeTmp'

Building C object CMakeFiles/cmTC_4c9f4.dir/CMakeCCompilerABI.c.obj

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One potential source of the issue I identified with Matlab R2020a is in the file FindMatlab.cmake at line 243. It should include "R2020a=9.8". Yet, adding this line does not fix the issue nor change the terminal output.

I'm not sure why the file FindMatlab.cmake is in the project though as it should be included in cmake. In this commit for cmake they added support for matlab R2020a. Kitware/CMake@75331a4 I do not know at the moment if they did something else that would make it work. Perhaps there's a way to ask cmake to use its own FindMatlab.cmake rather than the (outdated) one in the project?

Best,
Alexander

Mex functions parsing degrees of freedom (q) as an index variable

In many mex functions, the q DOF vector is being parsed as an index. For example:

Bartels/matlab/linear_tetmesh_neohookean_q.cpp

Line 35 in ae1aee2

igl::matlab::parse_rhs_index(prhs+2,q);

parse_rhs_index converts matlab index variables to 0-indexed for cpp:

igl::matlab::parse_rhs_index(...) {
  parse_rhs_double(prhs,V);
  V.array() -= 1;
}

Am I missing something or is this a bug? If this is a problem, I can submit a pull request to correct instances of this.

Unspecified order of Lamé parameters in d2psi_neohookean_dF2

d2psi_neohookean_dF2 takes a matrix of # of triangles/tet x 2 where each row contain (I believe) the 2 Lamé parameters. Yet since this file has no matlab documentation and its code is entirely generated with no comments, it is not easy to know which of the 2 params is the mu and the lambda. I would presume lambda and mu since they are called the first and the second Lamé parameters respectively but I do not know myself at the moment. Would be great to have a simple line comment or documentation block on the function.

Naming inconsistency in shape function derivatives

In the *_dphi_dX functions, the output variable is named dX, but this same value is named dXinv in the *_dq2 and *_dq functions. I think this is true for both the main source files and the mex wrappers.

Non-const reference in Hessian function

I ran into a compile error because V is a non-const reference so I can't pass a const reference to it (though it could be in other functions as well - I haven't checked). Source:

Bartels/include/linear_tri3dmesh_stvk_dq2.h

Line 19 in 38adea7

    
           void linear_tri3dmesh_stvk_dq2(Eigen::SparseMatrix<DerivedRet, Options, StorageIndex> &H, Eigen::MatrixBase<DerivedV> &V,  Eigen::Ref<const Eigen::MatrixXi> E,

Alternative definition for neo-hookean model

I was trying to use the alternative definition for the neo-hookean model (the one commented out in the code, $W=C_{1}\left(I_{1}-3-2 \ln J\right)+D_{1}(J-1)^{2} ; J=\operatorname{det}(\boldsymbol{F})=\lambda_{1} \lambda_{2} \lambda_{3}$). But it seems to be more unstable than the uncommented definition in the code ($W=C_{1}\left(J^{-2 / 3} I_{1}-3\right)+\left(\frac{C_{1}}{6}+\frac{D_{1}}{4}\right)\left(J^{2}+\frac{1}{J^{2}}-2\right)$), either using fmincon or Newton's method.

But the first definition seems more natural, with $\ln J$ ensuring it's inversion-free and $(J-1)^2$ ensuring it's volume-preserving. Is there any way to make Bartels support the first definition better (maybe without the $\ln J$ since that may cause trouble)? Thank you! :)

Configuration issue with Windows

Running the following command fails as:
$ cmake -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=gcc .. -G "MinGW Makefiles"

-- Creating target: igl::core (igl)
CMake Error at C:/Users/aravi/Downloads/Bartels/cmake/FindPackageHandleStandardArgs.cmake:164 (message):
Could NOT find Matlab (missing: Matlab_MEX_LIBRARY Matlab_MX_LIBRARY
Matlab_ENGINE_LIBRARY Matlab_DATAARRAY_LIBRARY) (found version "9.8")
Call Stack (most recent call first):
Bartels/cmake/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
Bartels/cmake/FindMatlab.cmake:1805 (find_package_handle_standard_args)
CMakeLists.txt:24 (find_package)

-- Configuring incomplete, errors occurred!

Using mingw-64 as the build tool. Do you know how I could get the compilation working?

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