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multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mutationcount

Count Mutations between a reference sequence and aligned sequences

neovim-init.vim

:izakaya_lantern: A Neovim configuration for productive developers who want a functional yet aesthetic Vim experience :izakaya_lantern:

ngscoverage

454 & Torrent coverage

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

notes

Shell script for compiling pdf/html notes with pandoc.

paver

Python-based project scripting.

pbs

A python package for submitting and managing PBS jobs

presentations

puticr

python-project-template

A template Python project with a focus on best practices.

python-project-template-1

DO NOT FORK, CLICK ON "Use this template" - A github template to start a Python Project - this uses github actions to generate your project based on the template.

python_template

Template for all Python Projects

pywrairlib

Wrair VDB Python Libraries

r

rpackage

redmine

Mirror of redmine code source - Official SVN repository is at https://svn.redmine.org/redmine - contact: @jbbarth or jeanbaptiste.barth (at) gmail (dot) com

redsample

Build sample management using redmine api

redscheduler

run jobs based on redmine issues

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

runtblastx

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

subsamplebam

Hopefully will allow you to randomly subsample a bam to get even depth

sunbeam

A robust, extensible metagenomics pipeline

temposeqcount

tictacturing-instructional

toxpir

toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.

viewbs

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

vim-ipython

Fork of vim-Ipython working on ipdb integration

webpack-starter

✨ A lightweight foundation for your next webpack based frontend project.

wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies