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Dereje Jima's Projects

annotables icon annotables

R data package for annotating/converting Gene IDs

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

beamer-snippets icon beamer-snippets

Website for personal collection and previewing of Beamer and TikZ snippets. Presented with Python/Jinja2.

biopandas icon biopandas

represent genomic data as pandas dataframes

bmc icon bmc

My bespoke, multipurpose class; designed for general use in LaTeX documents.

cpg_me icon cpg_me

A whole-genome bisulfite sequencing (WGBS) pipeline for the analysis and QC of DNA methylation that goes from from raw reads to a CpG count matrix

cv icon cv

My YAML cv and resume.

dotfiles icon dotfiles

YADR - The best vim,git,zsh plugins and the cleanest vimrc you've ever seen

dotfiles-1 icon dotfiles-1

:wrench: .files, including ~/.macos — sensible hacker defaults for macOS

e-mtab-6141 icon e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

g2518av001 icon g2518av001

R annotation package for Agilent-013223 D. rerio (Zebrafish) Oligo Microarray G2518A Option 001

genefu icon genefu

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

ibl015747 icon ibl015747

Agilent-015747 Zebrafish 44K Oligo Microarray Option 003 R annotation package

latexcv icon latexcv

:necktie: A collection of cv and resume templates written in LaTeX. Leave an issue if your language is not supported!

learn-d3 icon learn-d3

A Webpack + Babel setup for learning D3.js

learning-d3-v4 icon learning-d3-v4

Code examples for the book, "D3 4.x Data Visualization", published by Packt. https://www.amazon.co.uk/D3-js-4-x-Data-Visualization-Third-ebook/dp/B01MG90SSJ/

loopback-react icon loopback-react

loopback - react, router, redux, axios, formik, bootstrap 4 fullstack playground with authentication and user management

manim icon manim

Animation engine for explanatory math videos

moabs icon moabs

Automatically exported from code.google.com/p/moabs

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