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memetools

Run MEME from R using Docker

motiftools

Tools for the analysis of motifs

mrbayes

Dockerfile for MrBayes

nagoya_course_2017_book

Handbook for the topics covered in the Nagoya Bioinformatics course 2017

ngstools

Miscellaneous tools for the analysis of NGS data

omisc

Miscellaneous tools for omics analysis

q3tools

Custom functions for the analysis of omics data

rdcq

A package implementing methods for the estimation of cell abundaces from omics data

rmotifx

Discovery of biological sequence motifs in R

rtrm

Identification of transcriptional regulatory modules from PPI networks

rtrmui

samtools

Dockerfile for samtools

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scmisc

Miscellaneous tools for single cell analysis

scmisc-py

Miscelaneous tools for the analysis of single cell genomics data.

seqminer

seqminer_perl

seurat

R toolkit for single cell genomics

shiny

shinycluster

simtrn

single-cell-best-practices

https://www.sc-best-practices.org

singlecellhaystack-py

Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).

sphinx-tests

Test documentation deployment.

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

trntools

umitools

Docker file for umi_tools.

vardbdev

Automatically exported from code.google.com/p/vardbdev

vdjmisc

Miscellaneus Tools for The Analysis of Immune Repertoires

xml2

Bindings to libxml2