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marginalmodelcifti

mastergui

mastergui_docs

movement_regressors_power_plots

Correction of respiratory artifacts in MRI head motion estimates

mysql_scripts

Python and SQL Scripts for Administrating a MySQL DB

nda-abcd-collection-3165

This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feedback.

nda-abcd-s3-downloader

Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.

nda-bids-upload

For uploading BIDS data to the NDA.

nhp-abcd-bids-pipeline

Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.

nnunet

parse_vnav_motion

A python script for parsing motion info in vNav DICOM series

power_analysis_infant_sensory_intervention_study

repo-health-checks

Health check of repository

rfrf

Functional Random Forest R package

score-conners-3

sharebear

simnibs_cifti_tools_rtd

simple-if

A very simple app used to match fmap files to other imaging files and update BIDS jsons to suit.

slurm_pipeline_wrappers

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools) -- surface-based fix

surfconnectivity

swipesforscience

A crowdsource quality assurance application for use with neuroimaging datasets.

swipesforsciencetoolkit

Tool kit for exploratory data analysis and usage of SwipesForScience JSON data, complete with anonymous sample data.

synthseg

Contrast-agnostic segmentation of MRI scans

ticsfigurecode

Reproduces the figures found in the TICS submission paper, "The Heterogeneity problem: Approaches to better characterize the variance in cognitive neuroscience and mental health research"

whitematter-seg

Code used for handling white matter segmentation and FSL labels

xcp_d

post processing of fmriprep, nibabies, hcp, and dcan

xcpd2dcanmotion

Utility to convert XCP-D HDF5 motion data files to DCANBOLDProc format