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japhir

isogeochem's Issues

fails install when I try to build the vignettes

Hi David, nice work! I wanted to have a closer look at the vignette to see how your work differentiates itself from my clumpedr package, but the installation fails when I set it to build the vignettes. Installation does work fine when I don't set the build_vignettes argument.

devtools::install_github("davidbajnai/isogeochem", build_vignettes=TRUE, lib='~/R/x86_64-pc-linux-gnu-library/', force=T)
Using github PAT from envvar GITHUB_PAT
Downloading GitHub repo davidbajnai/isogeochem@HEAD
✔  checking for file ‘/tmp/Rtmp4kKBHi/remotes6c5e123e1976/davidbajnai-isogeochem-12dce95/DESCRIPTION’ ...
─  preparing ‘isogeochem’:
✔  checking DESCRIPTION meta-information ...
─  installing the package to build vignettes
E  creating vignettes (2.5s)
   --- re-building ‘devils_hole_vignette.Rmd’ using rmarkdown
   Loading required package: devtools
   Loading required package: usethis
   Using github PAT from envvar GITHUB_PAT
   Quitting from lines 29-31 (devils_hole_vignette.Rmd)
   Error: processing vignette 'devils_hole_vignette.Rmd' failed with diagnostics:
   Failed to install 'isogeochem' from GitHub:
     HTTP error 401.
     Bad credentials

     Rate limit remaining: 59/60
     Rate limit reset at: 2021-09-15 10:23:36 UTC


   --- failed re-building ‘devils_hole_vignette.Rmd’

   --- re-building ‘kimoneil_vignette.Rmd’ using rmarkdown
   Using github PAT from envvar GITHUB_PAT
   Quitting from lines 30-32 (kimoneil_vignette.Rmd)
   Error: processing vignette 'kimoneil_vignette.Rmd' failed with diagnostics:
   Failed to install 'isogeochem' from GitHub:
     HTTP error 401.
     Bad credentials

     Rate limit remaining: 58/60
     Rate limit reset at: 2021-09-15 10:23:36 UTC


   --- failed re-building ‘kimoneil_vignette.Rmd’

   SUMMARY: processing the following files failed:
     ‘devils_hole_vignette.Rmd’ ‘kimoneil_vignette.Rmd’

   Error: Vignette re-building failed.
   Execution halted
Error: Failed to install 'isogeochem' from GitHub:
  System command 'R' failed, exit status: 1, stdout + stderr (last 10 lines):
E>   Rate limit reset at: 2021-09-15 10:23:36 UTC
E>
E>
E> --- failed re-building ‘kimoneil_vignette.Rmd’
E>
E> SUMMARY: processing the following files failed:
E>   ‘devils_hole_vignette.Rmd’ ‘kimoneil_vignette.Rmd’
E>
E> Error: Vignette re-building failed.
E> Execution halted
Warning message:
1 components of `...` were not used.

We detected these problematic arguments:
* `lib`

Did you misspecify an argument?

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