david-peede / chimp_maf_to_vcf Goto Github PK
View Code? Open in Web Editor NEWCode to convert hg19.panTro6.synNet.maf.gz to an all sites VCF file where the only indiviual is panTro6 and is homozygous at every site. You can download the .maf file from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsPanTro6/hg19.panTro6.synNet.maf.gz