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View Code? Open in Web Editor NEW๐ A CPython extension for the Hyperscan regular expression matching library.
Home Page: https://python-hyperscan.readthedocs.io/en/latest/
License: MIT License
๐ A CPython extension for the Hyperscan regular expression matching library.
Home Page: https://python-hyperscan.readthedocs.io/en/latest/
License: MIT License
from typing import Optional, Any, List
import hyperscan
def on_match(id: int, start: int, end: int, flags: int, context: Optional[Any] = None) -> Optional[bool]:
context['results'].append((id, start, end))
return 0
db = hyperscan.Database()
patterns = (
# expression, id, flags
(br'O+M', 0, hyperscan.HS_FLAG_CASELESS|hyperscan.HS_FLAG_SOM_LEFTMOST),
)
expressions, ids, flags = zip(*patterns)
db.compile(
expressions=expressions, ids=ids, elements=len(patterns), flags=flags
)
lines = ['Om', 'OOm', 'oom', 'sroom', 'communication', 'surveillance']
context = {'results': []}
text = str.encode("\n".join(lines))
print(text)
db.scan(text, match_event_handler=on_match, context=context)
for result in context['results']:
print(result)
(0, 0, 2) ->Om
(0, 3, 6) -> OOm
(0, 7, 10) -> oom
(0, 13, 16) ->oom (in sroom)
(0, 18, 20)->om (in communication)
with re.findall()
re.findall(rb'O+M', text, flags=re.IGNORECASE)
[b'Om', b'OOm', b'oom', b'oom']
This fork provides multiplatform support:
https://github.com/VectorCamp/vectorscan
I try to run pileline using mutliprocessing with hyperscan.
i use with closing(Pool(args.nr_proc)) as pool:
to define process_pool
I use pool.apply_async()
to generate list of testks
When I run tasks I get:
raise self._value
File "/usr/lib/python3.9/multiprocessing/pool.py", line 537, in _handle_tasks
put(task)
File "/usr/lib/python3.9/multiprocessing/connection.py", line 211, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/usr/lib/python3.9/multiprocessing/reduction.py", line 51, in dumps
cls(buf, protocol).dump(obj)
TypeError: cannot pickle 'hyperscan.Database' object```
First, thanks for all the work on this extremely useful library โ
Regarding named capture groups, does the above approach lead to a case in which, for a pattern like b'(?<foo>ax) bx (?<bar>cx)
, the names foo
and bar
can be recovered (along with their associated content) in the match handler?
The goal would be to obtain the necessary context to create a dictionary such as
{
"foo": "ax",
"bar": "cx",
}
HI,
I am using your wrapper and it is great. But unfortunately, I am missing a feature that I really need for my project.
I need to know when hyperscan is done with scanning the block of text that I provided.
At the moment the wrapper only calls when a match is found but what if no match is found at all. I have no way of telling is it still searching or is it done just that it didn't find anything.
I came up with a small fix and I am going to create a pull request. Keep in mind I don't know any C and all of this was done with google ๐
Hi! I'm curious, is there any ability to get scan results either synchronously without passing a callback or as "awaitiable" object of an asyncio event loop?
Statically linking Hyperscan would result in a much larger extension binary size (~225mb), and require a request to pypa/warehouse to increase the upload limit on the PyPI project. The upshot is end users wouldn't need to (re-)build Hyperscan from source, at least on supported platforms (Linux/manylinux for now). Static linking would be especially helpful for easier package upgrades (#28).
Questions:
Feedback and objections are welcome, otherwise I think this is something that makes sense to move toward in the next release.
As of v0.5.0 this example from the docs doesn't work:
# Deserializing (loading from bytes):
db = hyperscan.loadb(serialized)
because loadb has a mandatory mode parameter. Do the docs want to be updated to db = hyperscan.loadb(serialized, mode=hyperscan.HS_MODE_BLOCK)
, or does loadb
want a default mode value? I'm guessing you added the breaking change because it's unsafe to loadb
without supplying the same mode that was used when dumping, so the fix is a docs update.
Hi, I was attempting to use your test_hyperscan.py script to benchmark and parse an Ubuntu syslog using regex with some modifications. Unfortunately, it seems as if the end offset provided during the callback using both the database_block and database_stream is incrementing regardless of where the match should actually end.
Here is the modified script:
import hyperscan
from time import time
#timestamp regex
_timestamp = r"(\d{2}:\d{2}:\d{2})?"
#format: [timestamp] 00[00]/00/00[00] [timesamp]
_standard_date = (
r"%s( )?" #timestamp
r"(([1-2][0-9]{3}|3000)|([0-2]?[0-9]|3[0-1]))" #00[00]
r"(\/|-)" #/ or -
r"([0-2]?[0-9]|3[0-1])" #00
r"(\/|-)" #/ or -
r"(([1-2][0-9]{3}|3000)|([0-2]?[0-9]|3[0-1]))" #00[00]
r"%s( )?" #timestamp
)%(_timestamp,_timestamp)
#format: [timestamp] [day or year] [month] [year or day] [timestamp] - not specficly in that order
_written_date = (
r"%s( )?"
r"("
r"([1-2][0-9]{3}|3000)|(([0-2]?[0-9]|3[0-1])(-([0-2]?[0-9]|3[0-1]))?)"
r")?(?:, | of )?"
r"("
r"(Jan(?:uary)?|Feb(?:ruary)?|Mar(?:ch)?|Apr(?:il)?"
r"|May|Jun(?:e)?|Jul(?:y)?|Aug(?:ust)?|Sep(?:tember)?|Oct(?:ober)?"
r"|Nov(?:ember)?|Dec(?:ember)?)"
r")(?:,|\.)?( )?"
r"("
r"([1-2][0-9]{3}|3000)|(([0-2]?[0-9]|3[0-1])(-([0-2]?[0-9]|3[0-1]))?)"
r")?"
r"( )?%s"
)%(_timestamp,_timestamp)
def database_stream():
db = hyperscan.Database(mode=(hyperscan.HS_MODE_STREAM | hyperscan.HS_MODE_SOM_HORIZON_LARGE))
expressions = (_standard_date, _written_date)
ids = (0, 1)
flags = (0, 0)
db.compile(expressions=expressions, ids=ids, elements=len(expressions), flags=flags)
return db
def done(eid, start, end, flags, context):
"""
On a found result:
-Expression ID
-Start Offset
-End Offset
-Flags (Currently Unused)
-Context object passed to scan
"""
print end
def test_stream_scan(database_stream):
with open("/var/log/syslog", "rb") as f: lines = f.read().splitlines()
start = time()
with database_stream.stream(match_event_handler=done) as stream:
for line in lines:
stream.scan(line)
print "lines/sec:", len(lines)/(time()-start)
print "lines:", len(lines)
if __name__ == "__main__":
stream = database_stream()
test_stream_scan(stream)
From the beginning it would return with a value of 3 which seems to be invalid considering how the regex should be parsing the output, and by the end it would have a value of around 405000!?
Is this an issue or am i just misinterpreting the data?
Hi,
First of all, thanks for the library.
I noticed that not all items indexed by PySequence_ITEM
is Py_XDECREF'd
. Only the last item indexed seems to be reference counted. Could this be a possible problem?
https://github.com/darvid/python-hyperscan/blob/master/hyperscan/hyperscanmodule.c#L181
Hi,
Hope you are all well !
Can you provide more example for matching multiple patterns from a simple text ?
More other, I am gopher rather a pythonista but I am trying to learn python.
For now, in golang, I wrote the following script to create a database or patterns and to scan a text input.
patterns.txt
10 [$]\s?[+-]?[0-9]{1,3}(?:(?:,?[0-9]{3}))*(?:\.[0-9]{1,2})? PricePattern
11 (?:#?([0-9a-fA-F]{6}|[0-9a-fA-F]{3})) HexColorPattern
12 (?:(?:(?:\d{4}[- ]?){3}\d{4}|\d{15,16})) CreditCardPattern
13 4\d{3}[\s-]?\d{4}[\s-]?\d{4}[\s-]?\d{4} VISACreditCardPattern
14 5[1-5]\d{2}[\s-]?\d{4}[\s-]?\d{4}[\s-]?\d{4} MCCreditCardPattern
15 [13][a-km-zA-HJ-NP-Z1-9]{25,34} BtcAddressPattern
16 \d{1,4} [\w\s]{1,20}(?:street|st|avenue|ave|road|rd|highway|hwy|square|sq|trail|trl|drive|dr|court|ct|park|parkway|pkwy|circle|cir|boulevard|blvd)\W? StreetAddressPattern
17 \b\d{5}(?:[-\s]\d{4})?\b ZipCodePattern
18 (?i)P\.? ?O\.? Box \d+ PoBoxPattern
19 (?:\d{3}-\d{2}-\d{4}) SSNPattern
20 [0-9a-fA-F]{32} MD5HexPattern
21 [0-9a-fA-F]{40} SHA1HexPattern
22 [0-9a-fA-F]{64} SHA256HexPattern
23 [0-9a-fA-F]{8}-?[a-fA-F0-9]{4}-?[a-fA-F0-9]{4}-?[a-fA-F0-9]{4}-?[a-fA-F0-9]{12} GUIDPattern
24 (?:[\d]-?){12}[\dxX] ISBN13Pattern
25 (?:[\d]-?){9}[\dxX] ISBN10Pattern
26 (([a-fA-F0-9]{2}[:-]){5}([a-fA-F0-9]{2})) MACAddressPattern
27 [A-Z]{2}\d{2}[A-Z0-9]{4}\d{7}([A-Z\d]?){0,16} IBANPattern
28 ((git|ssh|http(s)?)|(git@[\w\.]+))(:(\/\/)?)([\w\.@\:/\-~]+)(\.git)(\/)? GitRepoPattern
29 (?:https?://)?(?:www)?(\S*?\.onion)\b OnionDomain
main.go
package main
import (
"bufio"
"encoding/json"
"fmt"
"io"
"net"
"net/http"
"os"
"strconv"
"strings"
"sync"
"time"
"github.com/flier/gohs/hyperscan"
"github.com/k0kubun/pp"
log "github.com/sirupsen/logrus"
"github.com/spf13/cobra"
"github.com/spf13/viper"
)
// with sync for resource lock
type scratch struct {
sync.RWMutex
s *hyperscan.Scratch
}
var (
Version string
Debug bool
Port int
FilePath string
Flag string
Scratch scratch
Db hyperscan.BlockDatabase
Uptime time.Time
RegexMap map[int]RegexLine
)
type Response struct {
Errno int `json:errno`
Msg string `json:msg`
Data interface{} `json:data`
}
type MatchResp struct {
Id int `json:id`
From int `json:from`
To int `json:to`
Flags int `json:flags`
Context string `json:context`
RegexLinev RegexLine `json:regexline`
}
type RegexLine struct {
Expr string
Data string
}
func main() {
Version = "0.0.1"
viper.AutomaticEnv()
var rootCmd = &cobra.Command{
Use: "gohs-ladon",
Short: fmt.Sprintf("Gohs-ladon Service %s", Version),
Run: run,
PreRunE: preRunE,
}
rootCmd.Flags().Bool("debug", false, "Enable debug mode")
rootCmd.Flags().Int("port", 8080, "Listen port")
rootCmd.Flags().String("filepath", "", "Dict file path")
rootCmd.Flags().String("flag", "ioum", "Regex Flag")
viper.BindPFlag("debug", rootCmd.Flags().Lookup("debug"))
viper.BindPFlag("port", rootCmd.Flags().Lookup("port"))
viper.BindPFlag("filepath", rootCmd.Flags().Lookup("filepath"))
viper.BindPFlag("flag", rootCmd.Flags().Lookup("flag"))
rootCmd.Execute()
}
func run(cmd *cobra.Command, args []string) {
// Todo add a goroutine to check if pattern file changed, and reload file.
// start web service
http.Handle("/", middleware(http.HandlerFunc(matchHandle)))
http.Handle("/_stats", middleware(http.HandlerFunc(statsHandle)))
addr := fmt.Sprintf("0.0.0.0:%d", Port)
s := &http.Server{
Addr: addr,
ReadTimeout: 1 * time.Second,
WriteTimeout: 1 * time.Second,
}
Uptime = time.Now()
fmt.Printf("[%s] gohs-ladon %s Running on %s\n", Uptime.Format(time.RFC3339), Version, addr)
if err := s.ListenAndServe(); err != nil {
log.Fatal(err)
}
}
func preRunE(cmd *cobra.Command, args []string) error {
Debug = viper.GetBool("debug")
Port = viper.GetInt("port")
FilePath = viper.GetString("filepath")
Flag = viper.GetString("flag")
if FilePath == "" {
return fmt.Errorf("empty regex filepath")
}
if Debug {
log.SetLevel(log.DebugLevel)
} else {
log.SetLevel(log.InfoLevel)
}
log.Debug("Prerun", args)
RegexMap = make(map[int]RegexLine)
err := buildScratch(FilePath)
return err
}
// build scratch for regex file.
func buildScratch(filepath string) (err error) {
file, err := os.Open(filepath)
if err != nil {
return err
}
defer file.Close()
patterns := []*hyperscan.Pattern{}
var expr hyperscan.Expression
var id int
// flags := Flag
// flags := hyperscan.Caseless | hyperscan.Utf8Mode
flags, err := hyperscan.ParseCompileFlag(Flag)
if err != nil {
return err
}
scanner := bufio.NewScanner(file)
for scanner.Scan() {
log.Debug(scanner.Text())
line := scanner.Text()
// line start with #, skip
if strings.HasPrefix(strings.TrimSpace(line), "#") {
log.Info(fmt.Sprintf("line start with #, skip line: %s", line))
continue
}
s := strings.Split(line, "\t")
// length less than 3, skip
if len(s) < 3 {
log.Info(fmt.Sprintf("line length less than 3, skip line: %s", line))
continue
}
id, err = strconv.Atoi(s[0])
if err != nil {
return fmt.Errorf("Atoi error.")
}
expr = hyperscan.Expression(s[1])
data := s[2]
pattern := &hyperscan.Pattern{Expression: expr, Flags: flags, Id: id}
patterns = append(patterns, pattern)
RegexMap[id] = RegexLine{string(expr), data}
}
if len(patterns) <= 0 {
return fmt.Errorf("Empty regex")
}
log.Info(fmt.Sprintf("regex file line number: %d", len(patterns)))
log.Info("Start Building, please wait...")
db, err := hyperscan.NewBlockDatabase(patterns...)
if err != nil {
return err
}
Db = db
scratch, err := hyperscan.NewScratch(Db)
if err != nil {
return err
}
Scratch.s = scratch
if err := scanner.Err(); err != nil {
return err
}
return nil
}
func middleware(next http.Handler) http.Handler {
return http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
start := time.Now()
next.ServeHTTP(w, r)
end := time.Now()
latency := end.Sub(start)
host, _, _ := net.SplitHostPort(r.RemoteAddr)
log.WithFields(log.Fields{
"remote_addr": host,
"latency": latency,
"content_length": r.ContentLength,
}).Info(fmt.Sprintf("%s %s", r.Method, r.RequestURI))
})
}
func matchHandle(w http.ResponseWriter, r *http.Request) {
query := r.FormValue("q")
var resp Response = Response{Errno: 0}
w.Header().Set("Content-Type", "application/json")
if query == "" {
resp.Errno = -1
resp.Msg = "empty param q"
} else {
inputData := []byte(`[email protected] 1HB5XMLmzFVj8ALj6mfBsbifRoD4miY36v https://twitter.com/x0rxkov random test sentence https://twitter.com/twitter
https://github.com/lucmichalski
https://github.com/lucmichalski/cars-dataset
[email protected]:fastai/fastai.git
`)
// results
var matchResps []MatchResp
eventHandler := func(id uint, from, to uint64, flags uint, context interface{}) error {
log.Info(fmt.Sprintf("id: %d, from: %d, to: %d, flags: %v, context: %s", id, from, to, flags, context))
regexLine, ok := RegexMap[int(id)]
if !ok {
regexLine = RegexLine{}
}
matchResp := MatchResp{Id: int(id), From: int(from), To: int(to), Flags: int(flags), Context: fmt.Sprintf("%s", context), RegexLinev: regexLine}
matchResps = append(matchResps, matchResp)
return nil
}
pp.Println("matchResps:", matchResps)
// lock scratch
Scratch.Lock()
if err := Db.Scan(inputData, Scratch.s, eventHandler, inputData); err != nil {
logFields := log.Fields{"query": query}
log.WithFields(logFields).Error(err)
resp.Errno = -2
resp.Msg = fmt.Sprintf("Db.Scan error: %s", err)
} else {
if len(matchResps) <= 0 {
resp.Errno = 1
resp.Msg = "no match"
}
resp.Data = matchResps
}
pp.Println("resp.Data:", resp.Data)
// unlock scratch
Scratch.Unlock()
}
json.NewEncoder(w).Encode(resp)
w.WriteHeader(http.StatusOK)
}
func statsHandle(w http.ResponseWriter, r *http.Request) {
w.WriteHeader(http.StatusOK)
io.WriteString(w, fmt.Sprintf("gohs-ladon %v, Uptime %v",
Version, Uptime.Format(time.RFC3339)))
}
Is it possible to create a small example, not restful if too complicated, for loading a text file of patterns and process a simple text input ?
Thanks in advance for any insights or inputs on that.
Cheers,
X
Thanks for the great library.
We discovered a memory leak when a Database object is compiled, dumped, and loaded multiple times. This is increasingly worse when the database is growing larger. Even creating a new Database object every time will result in a leak.
import hyperscan as hs
db = hs.Database(mode=hs.HS_MODE_BLOCK)
for i in range(100000):
db.compile(expressions=[b'test'], ids=[1], flags=[hs.HS_FLAG_ALLOWEMPTY])
import hyperscan as hs
for i in range(100000):
db = hs.Database(mode=hs.HS_MODE_BLOCK)
db.compile(expressions=[b'test'], ids=[1], flags=[hs.HS_FLAG_ALLOWEMPTY])
import hyperscan as hs
db = hs.Database(mode=hs.HS_MODE_BLOCK)
for i in range(100000):
db.compile(expressions=[b'test'], ids=[1], flags=[hs.HS_FLAG_ALLOWEMPTY])
b = hs.dumpb(db)
I tried to dig into the C code to find the problem, but I do not have enough expertise to solve the issue. Can someone help or point me in the right direction.
Thanks!
Thanks for this library! Have you looked into what would be involved in adding Chimera support? This would be useful in the eyecite library, since we're currently redundantly passing all the hyperscan matches through Python's re
to extract capture groups.
I'm curious if adding Chimera support would "just" involve adding tests and C wrappers like the existing Database_*
wrappers, or if there's some extra complexity that makes it more difficult to add at this point.
Thanks for your excellent work!
And here is some using case to improve
I'm catching hyperscan.ScanTerminated
to break scan if I return True and raise HS_SCAN_TERMINATED
error in callback func match_event_handler
. Which can early termination of scanning if I only want to know is matched but don't care whitch regex is mtached.
It can be achieved by catching hyperscan.ScanTerminated
or modify Database_scan
in hyperscanmodule.c
by judging HS_SCAN_TERMINATED
and HS_SUCCESS
.
Hi
Is there any similar function to hs_open_stream (which is in C based hyperscan library) in python?
In examples, stream mode worked by 'with' keyword. Since I do not want to close the stream after exiting 'with' statement, I can not use this way and need something like hs_open_stream.
Thank you for your support.
when it will be ready for windows ?
Thanks for this library. I was wondering if you had time to update this to include the new Literal API added in 5.2.0?
It would be useful to support extended pattern arguments.
Today, NULL is passed when adding patterns
python-hyperscan/hyperscan/hyperscanmodule.c
Line 184 in efbc82e
hyperscan
itself takes basically no time to import, but its use of pkg_resources
makes it slow. On my current system, pkg_resources
takes approximately 140ms, and appears to be used here only to provide __version__
. For applications sensitive to start-up times, it would be nice to be able to avoid this cost.
Hi, here is some small problams:
Thanks for your time.
Any plans/timeline to add support this scanning mode?
Sorry I haven't had time to dig into this as much as i'd like but i've been getting:
Illegal instruction (core dumped)
When preparing a hyperscan database, on alpine 3.18 / python 3.11 and with latest python-hyperscan tag.
It works fine on an iMac running Linux (Fedora). And also on a newer iMac running macOS. The box where its crashing (CI) does have an older processor and its in an Alpine container. But the processor does still meet the minimum requirements.
I've built a local wheel that uses -march=core2
and disabled FAT_RUNTIME and that works. -march=corei7
also works.
This post (from earlier this year) suggests musl doesn't support the ifunc feature required for fat runtime. Looking through build logs I see
-- Performing Test HAS_C_ATTR_IFUNC
-- Performing Test HAS_C_ATTR_IFUNC - Failed
-- Compiler does not support ifunc attribute, cannot build fat runtime
So the FAT_RUNTIME define is getting ignored in musl builds. I think this means that the wheels only support the arch that github runners happen to use, which is probably AVX2?
Any chance we can lower the target -march
in the official wheels?
Hi,
I am trying to use the halting feature of the match_event_handler.
The problem is when I return True I get a segmentation fault (core dumped)
My steps: I already have hyperscan installed
mkvirtualenv test_scan
pip3 install hyperscan
python3
Python 3.6.7 (default, Oct 22 2018, 11:32:17)
[GCC 8.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import hyperscan
>>>
>>> db = hyperscan.Database()
>>> patterns = (
... # expression, id, flags
... (br'fo+', 0, 0),
... (br'^foobar$', 1, hyperscan.HS_FLAG_CASELESS),
... (br'BAR', 2, hyperscan.HS_FLAG_CASELESS
... | hyperscan.HS_FLAG_SOM_LEFTMOST),
... )
>>> expressions, ids, flags = zip(*patterns)
>>> db.compile(
... expressions=expressions, ids=ids, elements=len(patterns), flags=flags
... )
>>> print(db.info().decode())
Version: 5.1.1 Features: AVX2 Mode: BLOCK
>>>
>>> def on_match(*args):
... print(args)
... return True
...
>>> # And now trying to scan
...
>>> db.scan(b'foobar', match_event_handler=on_match, context='foo')
(0, 0, 2, 0, 'foo')
[1] 21582 segmentation fault (core dumped) python3
I believe this is not intended.
The intended result will indeed print out args
only once and then halt any further scanning
Also, I think I found some inconsistency in the docs/release notes.
In the release notes:
match_event_handler will now halt scanning if a non-truthy (and not None) value is returned.
In the docs:
The return value determines whether or not Hyperscan should halt scanning. If the match handler returns anything other than None that is truthy, scanning will be halted....
PS:
Thank you for adding documentation to the package.
Hi,
I am trying to use python-hyperscan and start is always 0. Below my code:
regList = ['home']
allResultsMap = {i:reg for i,reg in enumerate(regList)}
db = hyperscan.Database()
def on_match(pattern_id, start, end, flags, context):
print(start,end)
return None
text = "my sweet home"
expressions, ids, flags = zip(*[(full_expr(reg).encode(),i,0) for i,reg in enumerate(regList)])
db.compile(
expressions=expressions, ids=ids, elements=len(expressions), flags=flags
)
db.scan(text, match_event_handler=on_match)
The output is :
0 13
Ubuntu 20.04, python 3.8, libhyperscan5/focal,now 5.2.1-1build1 amd64 [installed]
Am I doing something wrong?
When attempting to import hyperscan (0.7.7) on my machine that has an Intel Xeon E5-2690 CPU, it crashes my Python (3.12) interpreter with an illegal instruction error.
Hello David.
We need fixes contained in 5eddcc9.
Would you please do a release?
Thank you very much.
Type "help", "copyright", "credits" or "license" for more information.
import hyperscan
Traceback (most recent call last):
File "", line 1, in
File "/usr/local/lib/python3.11/site-packages/hyperscan/init.py", line 3, in
from hyperscan._hyperscan import * # noqa: F401, F403
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'hyperscan._hyperscan'
The link to the documentation is dead => https://python-hyperscan.rtfm.io/
The domain rtfm.io itself is for sale
easier to use
can make python-hyperscan more popular
When calling scan methods, the match_event_handler
callback can return a truthy value to indicate that the scan should be stopped. In the current error handling in HANDLE_HYPERSCAN_ERR
, this is treated as a regular error and raises a hyperscan.error
. While an early termination does feel like something that should show up in a return value, arguably it shouldn't be a regular exception.
As a closely related issue, HANDLE_HYPERSCAN_ERR
nicely formats an error string, but discards the error int, which makes it awkward to conditionally handle errors. For example, storing the error int on the exception would allow a workaround to the above issue like:
try:
hs_db.scan(sample, match_event_handler=on_match)
except hyperscan.error as err:
if err.code != HS_SCAN_TERMINATED:
raise
evandro@evandro-pc:~/Downloads$ pip3 --version
pypip 19.1.1 from /home/evandro/.local/lib/python3.6/site-packages/pip (python 3.6)
evandro@evandro-pc:~/Downloads$ python3 --version
Python 3.6.7
evandro@evandro-pc:~/Downloads$ git clone https://github.com/darvid/python-hyperscan
Cloning into 'python-hyperscan'...
remote: Enumerating objects: 18, done.
remote: Counting objects: 100% (18/18), done.
remote: Compressing objects: 100% (15/15), done.
remote: Total 352 (delta 4), reused 8 (delta 3), pack-reused 334
Receiving objects: 100% (352/352), 68.28 KiB | 284.00 KiB/s, done.
Resolving deltas: 100% (185/185), done.
evandro@evandro-pc:~/Downloads/python-hyperscan$ pip3 install . -v
Created temporary directory: /tmp/pip-ephem-wheel-cache-pna_pfxb
Created temporary directory: /tmp/pip-req-tracker-8mdv9nr2
Created requirements tracker '/tmp/pip-req-tracker-8mdv9nr2'
Created temporary directory: /tmp/pip-install-3i3xjrin
...
Building wheels for collected packages: hyperscan
Created temporary directory: /tmp/pip-wheel-i7zjeahx
Destination directory: /tmp/pip-wheel-i7zjeahx
Running command /usr/bin/python3 /home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmpcuyr4ceg
Traceback (most recent call last):
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/utils/env.py", line 382, in run
cmd, stderr=subprocess.STDOUT, **kwargs
File "/usr/lib/python3.6/subprocess.py", line 336, in check_output
**kwargs).stdout
File "/usr/lib/python3.6/subprocess.py", line 418, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/usr/bin/python', 'setup.py', 'build', '-b', 'build']' returned non-zero exit status 2.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 207, in <module>
main()
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 197, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 141, in build_wheel
metadata_directory)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/api.py", line 60, in build_wheel
poetry, SystemEnv(Path(sys.prefix)), NullIO(), Path(wheel_directory)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 50, in make_in
wb.build()
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 76, in build
self._build(zip_file)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 97, in _build
"python", str(setup), "build", "-b", str(self._path / "build")
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/utils/env.py", line 385, in run
raise EnvCommandError(e)
poetry.utils.env.EnvCommandError: Command ['/usr/bin/python', 'setup.py', 'build', '-b', 'build'] errored with the following output:
/usr/bin/python: can't open file 'setup.py': [Errno 2] No such file or directory
Building wheel for hyperscan (PEP 517) ... error
ERROR: Failed building wheel for hyperscan
Running setup.py clean for hyperscan
Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-req-build-u2nziy3a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python3.6/tokenize.py", line 452, in open
buffer = _builtin_open(filename, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-req-build-u2nziy3a/setup.py'
ERROR: Failed cleaning build dir for hyperscan
Failed to build hyperscan
Cleaning up...
Removing source in /tmp/pip-req-build-u2nziy3a
Removed build tracker '/tmp/pip-req-tracker-8mdv9nr2'
ERROR: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
Exception information:
Traceback (most recent call last):
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_internal/cli/base_command.py", line 178, in main
status = self.run(options, args)
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_internal/commands/install.py", line 385, in run
", ".join(r.name for r in build_failures)))
pip._internal.exceptions.InstallationError: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
evandro@evandro-pc:~/Downloads/python-hyperscan$
evandro@evandro-pc:~/Downloads/python-hyperscan$ pip3 install . -v
Created temporary directory: /tmp/pip-ephem-wheel-cache-pna_pfxb
Created temporary directory: /tmp/pip-req-tracker-8mdv9nr2
Created requirements tracker '/tmp/pip-req-tracker-8mdv9nr2'
Created temporary directory: /tmp/pip-install-3i3xjrin
Processing /myfiles/Downloads/python-hyperscan
Created temporary directory: /tmp/pip-req-build-u2nziy3a
Added file:///myfiles/Downloads/python-hyperscan to build tracker '/tmp/pip-req-tracker-8mdv9nr2'
Created temporary directory: /tmp/pip-build-env-b9b5cmsv
Running command /usr/bin/python3 /home/evandro/.local/lib/python3.6/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-b9b5cmsv/overlay --no-warn-script-location -v --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'poetry>=0.12'
Created temporary directory: /tmp/pip-ephem-wheel-cache-c9crto7m
Re-using requirements tracker '/tmp/pip-req-tracker-8mdv9nr2'
Created temporary directory: /tmp/pip-install-adglwq7w
Collecting poetry>=0.12
1 location(s) to search for versions of poetry:
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Getting page https://pypi.org/simple/poetry/
Looking up "https://pypi.org/simple/poetry/" in the cache
Request header has "max_age" as 0, cache bypassed
Starting new HTTPS connection (1): pypi.org:443
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Looking up "https://files.pythonhosted.org/packages/fc/18/4de899ef189949ed78553caf19cbd58a2d8d1ac0f1cdbf4820677fbaf197/poetry-0.12.16-py2.py3-none-any.whl" in the cache
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Caching due to etag
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1 location(s) to search for versions of pkginfo:
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Getting page https://pypi.org/simple/pkginfo/
Looking up "https://pypi.org/simple/pkginfo/" in the cache
Request header has "max_age" as 0, cache bypassed
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Ignoring unknown cache-control directive: immutable
Freshness lifetime from max-age: 365000000
The response is "fresh", returning cached response
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Removed pkginfo<2.0,>=1.4 from https://files.pythonhosted.org/packages/e6/d5/451b913307b478c49eb29084916639dc53a88489b993530fed0a66bab8b9/pkginfo-1.5.0.1-py2.py3-none-any.whl#sha256=a6d9e40ca61ad3ebd0b72fbadd4fba16e4c0e4df0428c041e01e06eb6ee71f32 (from poetry>=0.12) from build tracker '/tmp/pip-req-tracker-8mdv9nr2'
Collecting requests-toolbelt<0.9.0,>=0.8.0 (from poetry>=0.12)
1 location(s) to search for versions of requests-toolbelt:
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Getting page https://pypi.org/simple/requests-toolbelt/
Looking up "https://pypi.org/simple/requests-toolbelt/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/requests-toolbelt/ HTTP/1.1" 304 0
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Using version 0.8.0 (newest of versions: 0.8.0)
Created temporary directory: /tmp/pip-unpack-_m61ti_c
Looking up "https://files.pythonhosted.org/packages/97/8a/d710f792d6f6ecc089c5e55b66e66c3f2f35516a1ede5a8f54c13350ffb0/requests_toolbelt-0.8.0-py2.py3-none-any.whl" in the cache
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Downloading https://files.pythonhosted.org/packages/97/8a/d710f792d6f6ecc089c5e55b66e66c3f2f35516a1ede5a8f54c13350ffb0/requests_toolbelt-0.8.0-py2.py3-none-any.whl (54kB)
Downloading from URL https://files.pythonhosted.org/packages/97/8a/d710f792d6f6ecc089c5e55b66e66c3f2f35516a1ede5a8f54c13350ffb0/requests_toolbelt-0.8.0-py2.py3-none-any.whl#sha256=42c9c170abc2cacb78b8ab23ac957945c7716249206f90874651971a4acff237 (from https://pypi.org/simple/requests-toolbelt/)
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Caching due to etag
Added requests-toolbelt<0.9.0,>=0.8.0 from https://files.pythonhosted.org/packages/97/8a/d710f792d6f6ecc089c5e55b66e66c3f2f35516a1ede5a8f54c13350ffb0/requests_toolbelt-0.8.0-py2.py3-none-any.whl#sha256=42c9c170abc2cacb78b8ab23ac957945c7716249206f90874651971a4acff237 (from poetry>=0.12) to build tracker '/tmp/pip-req-tracker-8mdv9nr2'
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1 location(s) to search for versions of cachy:
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Getting page https://pypi.org/simple/cachy/
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https://pypi.org:443 "GET /simple/cachy/ HTTP/1.1" 200 1262
Updating cache with response from "https://pypi.org/simple/cachy/"
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Looking up "https://files.pythonhosted.org/packages/26/37/8ce3e7b330078b6797a34e79a80a8ad6935e404a3b903765417182c9ce19/cachy-0.2.0-py2.py3-none-any.whl" in the cache
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Getting page https://pypi.org/simple/requests/
Looking up "https://pypi.org/simple/requests/" in the cache
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Updating cache with response from "https://pypi.org/simple/requests/"
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Looking up "https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl" in the cache
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Collecting tomlkit<0.6.0,>=0.5.1 (from poetry>=0.12)
1 location(s) to search for versions of tomlkit:
* https://pypi.org/simple/tomlkit/
Getting page https://pypi.org/simple/tomlkit/
Looking up "https://pypi.org/simple/tomlkit/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/tomlkit/ HTTP/1.1" 200 2966
Updating cache with response from "https://pypi.org/simple/tomlkit/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/tomlkit/
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Looking up "https://files.pythonhosted.org/packages/71/c6/06c014b92cc48270765d6a9418d82239b158d8a9b69e031b0e2c6598740b/tomlkit-0.5.3-py2.py3-none-any.whl" in the cache
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Downloading https://files.pythonhosted.org/packages/71/c6/06c014b92cc48270765d6a9418d82239b158d8a9b69e031b0e2c6598740b/tomlkit-0.5.3-py2.py3-none-any.whl (116kB)
Downloading from URL https://files.pythonhosted.org/packages/71/c6/06c014b92cc48270765d6a9418d82239b158d8a9b69e031b0e2c6598740b/tomlkit-0.5.3-py2.py3-none-any.whl#sha256=f077456d35303e7908cc233b340f71e0bec96f63429997f38ca9272b7d64029e (from https://pypi.org/simple/tomlkit/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*)
Ignoring unknown cache-control directive: immutable
Updating cache with response from "https://files.pythonhosted.org/packages/71/c6/06c014b92cc48270765d6a9418d82239b158d8a9b69e031b0e2c6598740b/tomlkit-0.5.3-py2.py3-none-any.whl"
Caching due to etag
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Collecting jsonschema<4.0,>=3.0a3 (from poetry>=0.12)
1 location(s) to search for versions of jsonschema:
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Getting page https://pypi.org/simple/jsonschema/
Looking up "https://pypi.org/simple/jsonschema/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/jsonschema/ HTTP/1.1" 200 5936
Updating cache with response from "https://pypi.org/simple/jsonschema/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/jsonschema/
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Looking up "https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl" in the cache
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Downloading https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl (54kB)
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Updating cache with response from "https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl"
Caching due to etag
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Removed jsonschema<4.0,>=3.0a3 from https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl#sha256=a5f6559964a3851f59040d3b961de5e68e70971afb88ba519d27e6a039efff1a (from poetry>=0.12) from build tracker '/tmp/pip-req-tracker-8mdv9nr2'
Collecting pyparsing<3.0,>=2.2 (from poetry>=0.12)
1 location(s) to search for versions of pyparsing:
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Getting page https://pypi.org/simple/pyparsing/
Looking up "https://pypi.org/simple/pyparsing/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/pyparsing/ HTTP/1.1" 200 19996
Updating cache with response from "https://pypi.org/simple/pyparsing/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/pyparsing/
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Looking up "https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl" in the cache
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Downloading https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl (62kB)
Downloading from URL https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl#sha256=9b6323ef4ab914af344ba97510e966d64ba91055d6b9afa6b30799340e89cc03 (from https://pypi.org/simple/pyparsing/) (requires-python:>=2.6, !=3.0.*, !=3.1.*, !=3.2.*)
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Updating cache with response from "https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl"
Caching due to etag
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Collecting pyrsistent<0.15.0,>=0.14.2 (from poetry>=0.12)
1 location(s) to search for versions of pyrsistent:
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Getting page https://pypi.org/simple/pyrsistent/
Looking up "https://pypi.org/simple/pyrsistent/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/pyrsistent/ HTTP/1.1" 200 5234
Updating cache with response from "https://pypi.org/simple/pyrsistent/"
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Analyzing links from page https://pypi.org/simple/pyrsistent/
Found link https://files.pythonhosted.org/packages/3e/35/3d959e68e4b60cfc6c8c2d75ca615b81e415417ccf3fac80ae0bf6/pyrsistent-0.15.2.tar.gz#sha256=16692ee739d42cf5e39cef8d27649a8c1fdb7aa99887098f1460057c5eb75c3a (from https://pypi.org/simple/pyrsistent/), version: 0.15.2
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Looking up "https://files.pythonhosted.org/packages/8c/46/4e93ab8a379d7efe93f20a0fb8a27bdfe88942cc954ab0210c3164e783e0/pyrsistent-0.14.11.tar.gz" in the cache
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Downloading https://files.pythonhosted.org/packages/8c/46/4e93ab8a379d7efe93f20a0fb8a27bdfe88942cc954ab0210c3164e783e0/pyrsistent-0.14.11.tar.gz (104kB)
Downloading from URL https://files.pythonhosted.org/packages/8c/46/4e93ab8a379d7efe93f20a0fb8a27bdfe88942cc954ab0210c3164e783e0/pyrsistent-0.14.11.tar.gz#sha256=3ca82748918eb65e2d89f222b702277099aca77e34843c5eb9d52451173970e2 (from https://pypi.org/simple/pyrsistent/)
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Updating cache with response from "https://files.pythonhosted.org/packages/8c/46/4e93ab8a379d7efe93f20a0fb8a27bdfe88942cc954ab0210c3164e783e0/pyrsistent-0.14.11.tar.gz"
Caching due to etag
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writing pip-egg-info/pyrsistent.egg-info/PKG-INFO
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writing requirements to pip-egg-info/pyrsistent.egg-info/requires.txt
writing top-level names to pip-egg-info/pyrsistent.egg-info/top_level.txt
writing manifest file 'pip-egg-info/pyrsistent.egg-info/SOURCES.txt'
reading manifest file 'pip-egg-info/pyrsistent.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pip-egg-info/pyrsistent.egg-info/SOURCES.txt'
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Getting page https://pypi.org/simple/cleo/
Looking up "https://pypi.org/simple/cleo/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/cleo/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/cleo/
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Caching due to etag
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Looking up "https://pypi.org/simple/shellingham/" in the cache
Request header has "max_age" as 0, cache bypassed
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Looking up "https://files.pythonhosted.org/packages/2d/ac/e8a34d4b3d24bf554f40651b2aac549a3fc7223725bf10fbdfe2083b6372/shellingham-1.3.1-py2.py3-none-any.whl" in the cache
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Downloading https://files.pythonhosted.org/packages/2d/ac/e8a34d4b3d24bf554f40651b2aac549a3fc7223725bf10fbdfe2083b6372/shellingham-1.3.1-py2.py3-none-any.whl
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Getting page https://pypi.org/simple/cachecontrol/
Looking up "https://pypi.org/simple/cachecontrol/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/cachecontrol/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/cachecontrol/
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writing entry points to pip-egg-info/CacheControl.egg-info/entry_points.txt
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writing manifest file 'pip-egg-info/CacheControl.egg-info/SOURCES.txt'
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Getting page https://pypi.org/simple/html5lib/
Looking up "https://pypi.org/simple/html5lib/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/html5lib/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/html5lib/
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Looking up "https://pypi.org/simple/urllib3/" in the cache
Request header has "max_age" as 0, cache bypassed
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Caching due to etag
Analyzing links from page https://pypi.org/simple/urllib3/
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Getting page https://pypi.org/simple/chardet/
Looking up "https://pypi.org/simple/chardet/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/chardet/"
Caching due to etag
Analyzing links from page https://pypi.org/simple/chardet/
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Getting page https://pypi.org/simple/certifi/
Looking up "https://pypi.org/simple/certifi/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/certifi/"
Caching due to etag
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Updating cache with response from "https://pypi.org/simple/idna/"
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Getting page https://pypi.org/simple/six/
Looking up "https://pypi.org/simple/six/" in the cache
Request header has "max_age" as 0, cache bypassed
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Updating cache with response from "https://pypi.org/simple/six/"
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Using version 1.3.0 (newest of versions: 1.3.0)
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1 location(s) to search for versions of msgpack:
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Getting page https://pypi.org/simple/msgpack/
Looking up "https://pypi.org/simple/msgpack/" in the cache
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1 location(s) to search for versions of lockfile:
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Getting page https://pypi.org/simple/lockfile/
Looking up "https://pypi.org/simple/lockfile/" in the cache
Request header has "max_age" as 0, cache bypassed
https://pypi.org:443 "GET /simple/lockfile/ HTTP/1.1" 200 945
Updating cache with response from "https://pypi.org/simple/lockfile/"
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Analyzing links from page https://pypi.org/simple/lockfile/
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1 location(s) to search for versions of webencodings:
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Getting page https://pypi.org/simple/webencodings/
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Looking up "https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl" in the cache
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Downloading from URL https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl#sha256=a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78 (from https://pypi.org/simple/webencodings/)
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Building wheels for collected packages: pyrsistent, cachecontrol
Created temporary directory: /tmp/pip-wheel-zblqpok0
Building wheel for pyrsistent (setup.py): started
Destination directory: /tmp/pip-wheel-zblqpok0
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running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
copying _pyrsistent_version.py -> build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_checked_types.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pbag.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_toolz.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_precord.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/__init__.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pset.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/typing.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_helpers.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pvector.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pmap.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_immutable.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_plist.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_compat.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_transformations.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_field_common.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pclass.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/_pdeque.py -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/py.typed -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/__init__.pyi -> build/lib.linux-x86_64-3.6/pyrsistent
copying pyrsistent/typing.pyi -> build/lib.linux-x86_64-3.6/pyrsistent
running build_ext
building 'pvectorc' extension
creating build/temp.linux-x86_64-3.6
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.6m -c pvectorcmodule.c -o build/temp.linux-x86_64-3.6/pvectorcmodule.o
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installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_checked_types.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/typing.pyi -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pbag.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_toolz.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_precord.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/__init__.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pset.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/typing.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_helpers.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pvector.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pmap.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_immutable.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/__init__.pyi -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_plist.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_compat.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_transformations.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_field_common.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pclass.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/py.typed -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/pyrsistent/_pdeque.py -> build/bdist.linux-x86_64/wheel/pyrsistent
copying build/lib.linux-x86_64-3.6/_pyrsistent_version.py -> build/bdist.linux-x86_64/wheel
copying build/lib.linux-x86_64-3.6/pvectorc.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel
running install_egg_info
running egg_info
writing pyrsistent.egg-info/PKG-INFO
writing dependency_links to pyrsistent.egg-info/dependency_links.txt
writing requirements to pyrsistent.egg-info/requires.txt
writing top-level names to pyrsistent.egg-info/top_level.txt
reading manifest file 'pyrsistent.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyrsistent.egg-info/SOURCES.txt'
Copying pyrsistent.egg-info to build/bdist.linux-x86_64/wheel/pyrsistent-0.14.11-py3.6.egg-info
running install_scripts
adding license file "LICENCE.mit" (matched pattern "LICEN[CS]E*")
creating build/bdist.linux-x86_64/wheel/pyrsistent-0.14.11.dist-info/WHEEL
creating '/tmp/pip-wheel-zblqpok0/pyrsistent-0.14.11-cp36-cp36m-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding '_pyrsistent_version.py'
adding 'pvectorc.cpython-36m-x86_64-linux-gnu.so'
adding 'pyrsistent/__init__.py'
adding 'pyrsistent/__init__.pyi'
adding 'pyrsistent/_checked_types.py'
adding 'pyrsistent/_compat.py'
adding 'pyrsistent/_field_common.py'
adding 'pyrsistent/_helpers.py'
adding 'pyrsistent/_immutable.py'
adding 'pyrsistent/_pbag.py'
adding 'pyrsistent/_pclass.py'
adding 'pyrsistent/_pdeque.py'
adding 'pyrsistent/_plist.py'
adding 'pyrsistent/_pmap.py'
adding 'pyrsistent/_precord.py'
adding 'pyrsistent/_pset.py'
adding 'pyrsistent/_pvector.py'
adding 'pyrsistent/_toolz.py'
adding 'pyrsistent/_transformations.py'
adding 'pyrsistent/py.typed'
adding 'pyrsistent/typing.py'
adding 'pyrsistent/typing.pyi'
adding 'pyrsistent-0.14.11.dist-info/LICENCE.mit'
adding 'pyrsistent-0.14.11.dist-info/METADATA'
adding 'pyrsistent-0.14.11.dist-info/WHEEL'
adding 'pyrsistent-0.14.11.dist-info/top_level.txt'
adding 'pyrsistent-0.14.11.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for pyrsistent (setup.py): finished with status 'done'
Stored in directory: /home/evandro/.cache/pip/wheels/83/59/9a/a037b9b3c3e93d9275ea0aff9d6064400f372879dfdab01afe
Removing source in /tmp/pip-install-adglwq7w/pyrsistent
Created temporary directory: /tmp/pip-wheel-oz5it5lw
Building wheel for cachecontrol (setup.py): started
Destination directory: /tmp/pip-wheel-oz5it5lw
Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-adglwq7w/cachecontrol/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oz5it5lw --python-tag cp36
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/cachecontrol
copying cachecontrol/adapter.py -> build/lib/cachecontrol
copying cachecontrol/serialize.py -> build/lib/cachecontrol
copying cachecontrol/controller.py -> build/lib/cachecontrol
copying cachecontrol/wrapper.py -> build/lib/cachecontrol
copying cachecontrol/__init__.py -> build/lib/cachecontrol
copying cachecontrol/heuristics.py -> build/lib/cachecontrol
copying cachecontrol/cache.py -> build/lib/cachecontrol
copying cachecontrol/_cmd.py -> build/lib/cachecontrol
copying cachecontrol/compat.py -> build/lib/cachecontrol
copying cachecontrol/filewrapper.py -> build/lib/cachecontrol
creating build/lib/cachecontrol/caches
copying cachecontrol/caches/redis_cache.py -> build/lib/cachecontrol/caches
copying cachecontrol/caches/file_cache.py -> build/lib/cachecontrol/caches
copying cachecontrol/caches/__init__.py -> build/lib/cachecontrol/caches
running egg_info
writing CacheControl.egg-info/PKG-INFO
writing dependency_links to CacheControl.egg-info/dependency_links.txt
writing entry points to CacheControl.egg-info/entry_points.txt
writing requirements to CacheControl.egg-info/requires.txt
writing top-level names to CacheControl.egg-info/top_level.txt
reading manifest file 'CacheControl.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'CacheControl.egg-info/SOURCES.txt'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/adapter.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/serialize.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/controller.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/wrapper.py -> build/bdist.linux-x86_64/wheel/cachecontrol
creating build/bdist.linux-x86_64/wheel/cachecontrol/caches
copying build/lib/cachecontrol/caches/redis_cache.py -> build/bdist.linux-x86_64/wheel/cachecontrol/caches
copying build/lib/cachecontrol/caches/file_cache.py -> build/bdist.linux-x86_64/wheel/cachecontrol/caches
copying build/lib/cachecontrol/caches/__init__.py -> build/bdist.linux-x86_64/wheel/cachecontrol/caches
copying build/lib/cachecontrol/__init__.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/heuristics.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/cache.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/_cmd.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/compat.py -> build/bdist.linux-x86_64/wheel/cachecontrol
copying build/lib/cachecontrol/filewrapper.py -> build/bdist.linux-x86_64/wheel/cachecontrol
running install_egg_info
Copying CacheControl.egg-info to build/bdist.linux-x86_64/wheel/CacheControl-0.12.5-py3.6.egg-info
running install_scripts
adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
creating build/bdist.linux-x86_64/wheel/CacheControl-0.12.5.dist-info/WHEEL
creating '/tmp/pip-wheel-oz5it5lw/CacheControl-0.12.5-cp36-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'cachecontrol/__init__.py'
adding 'cachecontrol/_cmd.py'
adding 'cachecontrol/adapter.py'
adding 'cachecontrol/cache.py'
adding 'cachecontrol/compat.py'
adding 'cachecontrol/controller.py'
adding 'cachecontrol/filewrapper.py'
adding 'cachecontrol/heuristics.py'
adding 'cachecontrol/serialize.py'
adding 'cachecontrol/wrapper.py'
adding 'cachecontrol/caches/__init__.py'
adding 'cachecontrol/caches/file_cache.py'
adding 'cachecontrol/caches/redis_cache.py'
adding 'CacheControl-0.12.5.dist-info/LICENSE.txt'
adding 'CacheControl-0.12.5.dist-info/METADATA'
adding 'CacheControl-0.12.5.dist-info/WHEEL'
adding 'CacheControl-0.12.5.dist-info/entry_points.txt'
adding 'CacheControl-0.12.5.dist-info/top_level.txt'
adding 'CacheControl-0.12.5.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for cachecontrol (setup.py): finished with status 'done'
Stored in directory: /home/evandro/.cache/pip/wheels/36/bd/5f/dbbee4f2d51f97ecd12a363f870361179cb1fd4bc1174ea08a
Removing source in /tmp/pip-install-adglwq7w/cachecontrol
Successfully built pyrsistent cachecontrol
Installing collected packages: pkginfo, urllib3, chardet, certifi, idna, requests, requests-toolbelt, cachy, tomlkit, six, setuptools, pyrsistent, attrs, jsonschema, pyparsing, pastel, pylev, cleo, shellingham, msgpack, lockfile, cachecontrol, webencodings, html5lib, poetry
Creating /tmp/pip-build-env-b9b5cmsv/overlay/bin
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/pkginfo to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/chardetect to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/easy_install to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/easy_install-3.6 to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/jsonschema to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/doesitcache to 775
changing mode of /tmp/pip-build-env-b9b5cmsv/overlay/bin/poetry to 775
Successfully installed attrs-19.1.0 cachecontrol-0.12.5 cachy-0.2.0 certifi-2019.3.9 chardet-3.0.4 cleo-0.6.8 html5lib-1.0.1 idna-2.8 jsonschema-3.0.1 lockfile-0.12.2 msgpack-0.6.1 pastel-0.1.0 pkginfo-1.5.0.1 poetry-0.12.16 pylev-1.3.0 pyparsing-2.4.0 pyrsistent-0.14.11 requests-2.22.0 requests-toolbelt-0.8.0 setuptools-41.0.1 shellingham-1.3.1 six-1.12.0 tomlkit-0.5.3 urllib3-1.25.3 webencodings-0.5.1
Cleaning up...
Cleaned build tracker '/tmp/pip-req-tracker-8mdv9nr2'
1 location(s) to search for versions of pip:
* https://pypi.org/simple/pip/
Getting page https://pypi.org/simple/pip/
Looking up "https://pypi.org/simple/pip/" in the cache
Request header has "max_age" as 0, cache bypassed
Starting new HTTPS connection (1): pypi.org:443
https://pypi.org:443 "GET /simple/pip/ HTTP/1.1" 304 0
Analyzing links from page https://pypi.org/simple/pip/
Found link https://files.pythonhosted.org/packages/334469ef299fcd273de4438386deb7b8681dd059f0ee3b7/pip-19.1.tar.gz#sha256=d9137cb543d8a4d73140a3282f6d777b2e786bb6abb8add3ac5b6539c82cd624 (from https://pypi.org/simple/pip/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*), version: 19.1
Found link https://files.pythonhosted.org/packages/5c/e0/be401c003291b56efc55aeba6a80ab790d3d4cece2778288d65323009420/pip-19.1.1-py2.py3-none-any.whl#sha256=993134f0475471b91452ca029d4390dc8f298ac63a712814f101cd1b6db46676 (from https://pypi.org/simple/pip/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*), version: 19.1.1
Found link https://files.pythonhosted.org/packages/93/ab/f86b61bef7ab14909bd7ec3cd2178feb0a1c86d451bc9bccd5a1aedcde5f/pip-19.1.1.tar.gz#sha256=44d3d7d3d30a1eb65c7e5ff1173cdf8f7467850605ac7cc3707b6064bddd0958 (from https://pypi.org/simple/pip/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*), version: 19.1.1
Installing build dependencies ... done
Running command /usr/bin/python3 /home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /tmp/tmplw1t97no
Getting requirements to build wheel ... done
Running command /usr/bin/python3 /home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpiqwelz4w
Preparing wheel metadata ... done
Source in /tmp/pip-req-build-u2nziy3a has version 0.1.2, which satisfies requirement hyperscan==0.1.2 from file:///myfiles/Downloads/python-hyperscan
Removed hyperscan==0.1.2 from file:///myfiles/Downloads/python-hyperscan from build tracker '/tmp/pip-req-tracker-8mdv9nr2'
Building wheels for collected packages: hyperscan
Created temporary directory: /tmp/pip-wheel-i7zjeahx
Destination directory: /tmp/pip-wheel-i7zjeahx
Running command /usr/bin/python3 /home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmpcuyr4ceg
Traceback (most recent call last):
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/utils/env.py", line 382, in run
cmd, stderr=subprocess.STDOUT, **kwargs
File "/usr/lib/python3.6/subprocess.py", line 336, in check_output
**kwargs).stdout
File "/usr/lib/python3.6/subprocess.py", line 418, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/usr/bin/python', 'setup.py', 'build', '-b', 'build']' returned non-zero exit status 2.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 207, in <module>
main()
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 197, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 141, in build_wheel
metadata_directory)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/api.py", line 60, in build_wheel
poetry, SystemEnv(Path(sys.prefix)), NullIO(), Path(wheel_directory)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 50, in make_in
wb.build()
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 76, in build
self._build(zip_file)
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/masonry/builders/wheel.py", line 97, in _build
"python", str(setup), "build", "-b", str(self._path / "build")
File "/tmp/pip-build-env-b9b5cmsv/overlay/lib/python3.6/site-packages/poetry/utils/env.py", line 385, in run
raise EnvCommandError(e)
poetry.utils.env.EnvCommandError: Command ['/usr/bin/python', 'setup.py', 'build', '-b', 'build'] errored with the following output:
/usr/bin/python: can't open file 'setup.py': [Errno 2] No such file or directory
Building wheel for hyperscan (PEP 517) ... error
ERROR: Failed building wheel for hyperscan
Running setup.py clean for hyperscan
Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-req-build-u2nziy3a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python3.6/tokenize.py", line 452, in open
buffer = _builtin_open(filename, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-req-build-u2nziy3a/setup.py'
ERROR: Failed cleaning build dir for hyperscan
Failed to build hyperscan
Cleaning up...
Removing source in /tmp/pip-req-build-u2nziy3a
Removed build tracker '/tmp/pip-req-tracker-8mdv9nr2'
ERROR: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
Exception information:
Traceback (most recent call last):
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_internal/cli/base_command.py", line 178, in main
status = self.run(options, args)
File "/home/evandro/.local/lib/python3.6/site-packages/pip/_internal/commands/install.py", line 385, in run
", ".join(r.name for r in build_failures)))
pip._internal.exceptions.InstallationError: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
evandro@evandro-pc:~/Downloads/python-hyperscan$
Hi,
I have tried to install python-hyperscan on my macbook. I have no luck no matter I use pip or poetry. I have hyperscan 5.4 installed properly by brew. While I try to install python-hyperscan, I always get error. .... Couldn't figure it out.
For pip, the error message is like
Building wheels for collected packages: hyperscan
Building wheel for hyperscan (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /Applications/Xcode.app/Contents/Developer/usr/bin/python3 /Library/Python/3.8/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/tmpue4jkb24
cwd: /private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7
Complete output (37 lines):
A setup.py file already exists. Using it.
Traceback (most recent call last):
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7/setup.py", line 29, in
build(setup_kwargs)
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7/build.py", line 48, in build
**pkgconfig(['libhs']),
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7/build.py", line 27, in pkgconfig
subprocess.check_output(
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 489, in run
with Popen(*popenargs, **kwargs) as process:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 854, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 1702, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'pkg-config'
Traceback (most recent call last):
File "/Library/Python/3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in
main()
File "/Library/Python/3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/Library/Python/3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 204, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-build-env-ywjtnpm1/overlay/lib/python3.8/site-packages/poetry/core/masonry/api.py", line 68, in build_wheel
return unicode(WheelBuilder.make_in(poetry, Path(wheel_directory)))
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-build-env-ywjtnpm1/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/wheel.py", line 72, in make_in
wb.build()
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-build-env-ywjtnpm1/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/wheel.py", line 103, in build
self._build(zip_file)
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-build-env-ywjtnpm1/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/wheel.py", line 135, in _build
self._run_build_command(setup)
File "/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-build-env-ywjtnpm1/overlay/lib/python3.8/site-packages/poetry/core/masonry/builders/wheel.py", line 163, in _run_build_command
subprocess.check_call(
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 364, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/Applications/Xcode.app/Contents/Developer/usr/bin/python3', '/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7/setup.py', 'build', '-b', '/private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-install-slrkf9b5/hyperscan_17835bf2676c44b2b82c6fac9b18d0d7/build']' returned non-zero exit status 1.
ERROR: Failed building wheel for hyperscan
Failed to build hyperscan
ERROR: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
'
=============
If I use poetry, the error is like the below
Installing the current project: hyperscan (0.2.0)
EnvCommandError
Command ['/Users/xxxx/Library/Caches/pypoetry/virtualenvs/hyperscan-ZlXSVyo--py3.8/bin/pip', 'install', '-e', '/Users/xxxx/Project/Python/python-hyperscan', '--no-deps'] errored with the following return code 1, and output:
Obtaining file:///Users/xxxx/Project/Python/python-hyperscan
ERROR: Command errored out with exit status 1:
command: /Users/xxxx/Library/Caches/pypoetry/virtualenvs/hyperscan-ZlXSVyo--py3.8/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/Users/xxxx/Project/Python/python-hyperscan/setup.py'"'"'; file='"'"'/Users/xxxx/Project/Python/python-hyperscan/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/jk/vg7nnbhj4qg0r0xz3yhskylw0000gn/T/pip-pip-egg-info-ilttc02s
cwd: /Users/xxxx/Project/Python/python-hyperscan/
Complete output (17 lines):
Traceback (most recent call last):
File "", line 1, in
File "/Users/xxxx/Project/Python/python-hyperscan/setup.py", line 29, in
build(setup_kwargs)
File "/Users/xxxx/Project/Python/python-hyperscan/build.py", line 48, in build
**pkgconfig(['libhs']),
File "/Users/xxxx/Project/Python/python-hyperscan/build.py", line 27, in pkgconfig
subprocess.check_output(
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 489, in run
with Popen(*popenargs, **kwargs) as process:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 854, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 1702, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'pkg-config'
----------------------------------------
WARNING: Discarding file:///Users/xxxx/Project/Python/python-hyperscan. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
at /usr/local/Cellar/poetry/1.1.5/libexec/lib/python3.9/site-packages/poetry/utils/env.py:1074 in run
1070โ output = subprocess.check_output(
1071โ cmd, stderr=subprocess.STDOUT, **kwargs
1072โ )
1073โ except CalledProcessError as e:
โ 1074โ raise EnvCommandError(e, input=input)
1075โ
1076โ return decode(output)
1077โ
1078โ def execute(self, bin, *args, **kwargs):
can not successfully install by Dockerfile
Hi, I'm facing the following error when trying to install hyperscan==0.1.5 from pip (I will give more context below).
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmp9ybf83mg
cwd: /tmp/pip-install-abs2u1co/hyperscan_e483bc77b1a7411d9142094e042fbd7d
Complete output (25 lines):
A setup.py file already exists. Using it.
Traceback (most recent call last):
File "/tmp/pip-install-abs2u1co/hyperscan_e483bc77b1a7411d9142094e042fbd7d/setup.py", line 2, in <module>
from setuptools import setup
ModuleNotFoundError: No module named 'setuptools'
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
main()
File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 204, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/tmp/pip-build-env-pdwain6d/overlay/lib/python3.9/site-packages/poetry/core/masonry/api.py", line 57, in build_wheel
return unicode(WheelBuilder.make_in(poetry, Path(wheel_directory)))
File "/tmp/pip-build-env-pdwain6d/overlay/lib/python3.9/site-packages/poetry/core/masonry/builders/wheel.py", line 59, in make_in
wb.build()
File "/tmp/pip-build-env-pdwain6d/overlay/lib/python3.9/site-packages/poetry/core/masonry/builders/wheel.py", line 89, in build
self._build(zip_file)
File "/tmp/pip-build-env-pdwain6d/overlay/lib/python3.9/site-packages/poetry/core/masonry/builders/wheel.py", line 121, in _build
self._run_build_command(setup)
File "/tmp/pip-build-env-pdwain6d/overlay/lib/python3.9/site-packages/poetry/core/masonry/builders/wheel.py", line 149, in _run_build_command
subprocess.check_call(
File "/usr/local/lib/python3.9/subprocess.py", line 373, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/local/bin/python', '/tmp/pip-install-abs2u1co/hyperscan_e483bc77b1a7411d9142094e042fbd7d/setup.py', 'build', '-b', '/tmp/pip-install-abs2u1co/hyperscan_e483bc77b1a7411d9142094e042fbd7d/build']' returned non-zero exit status 1.
----------------------------------------
ERROR: Failed building wheel for hyperscan
Failed to build hyperscan
ERROR: Could not build wheels for hyperscan which use PEP 517 and cannot be installed directly
I'm using docker, image python:3.9-slim-buster
. I have already installed libhyperscan5
(and all the other dependencies needed) and made sure that setuptools is installed and upgraded (I have v53.0.0).
I have made a test also for hyperscan==0.2.0 and no errors are raised during the installation. Yet, every time I import hyperscan in my code, I get the same error described in #28
root@08e7ef3102e3:~# python -c "import hyperscan"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/local/lib/python3.9/site-packages/hyperscan/__init__.py", line 5, in <module>
from hyperscan._hyperscan import *
ImportError: /usr/local/lib/python3.9/site-packages/hyperscan/_hyperscan.cpython-39-x86_64-linux-gnu.so: undefined symbol: hs_compile_lit_multi
Nevertheless, and it is a big question mark to me, the setup MacOS (11.2) + python3.9 + hyperscan library installed from brew + pip install hyperscan==0.2.0 perfectly works
Hyperscan allows serialising a database. It would be great if this library had support to serialise a database to disk and restore it at a later point.
https://intel.github.io/hyperscan/dev-reference/api_files.html#c.hs_serialize_database
Originally posted by darvid July 24, 2022
I'm struggling with some personal issues right now and probably won't have the time to maintain this package in the near future. If someone is willing to become a maintainer please let me know. Thanks.
static int match_handler(unsigned int id, unsigned long long from,
unsigned long long to, unsigned int flags,
void *context) {
...
return 0;
}
I'm new to Hyperscan, but according to the documentation here:
The match callback function has the capability to halt scanning by returning a non-zero value.
Maybe match_handler
should return whatever Python callback returns? This way we could also halt scanning from Python.
got error msg "File "/Users/kennywu/anaconda3/lib/python3.10/site-packages/hyperscan/init.py", line 3, in
from hyperscan._ext import * # noqa: F401, F403
ImportError: dlopen(/Users/kennywu/anaconda3/lib/python3.10/site-packages/hyperscan/_ext.cpython-310-darwin.so, 2): Symbol not found: __ZTTNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEE
Referenced from: /Users/kennywu/anaconda3/lib/python3.10/site-packages/hyperscan/_ext.cpython-310-darwin.so
Expected in: /usr/lib/libc++.1.dylib
in /Users/kennywu/anaconda3/lib/python3.10/site-packages/hyperscan/_ext.cpython-310-darwin.so"
when I tried the command python -c "import hyperscan"
.
how can I resolve it? thx.
Hi all,
I'm installing hyperscan on Mac M1 with pip install hyperscan and I get this error:
File "/Users/user/miniconda3/envs/env/lib/python3.10/site-packages/hyperscan/__init__.py", line 3, in <module> from hyperscan._ext import * # noqa: F401, F403 ImportError: dlopen(/Users/user/miniconda3/envs/env/lib/python3.10/site-packages/hyperscan/_ext.cpython-310-darwin.so, 0x0002): symbol not found in flat namespace '_ch_alloc_scratch'
Is this yet not supported on ARM architecture?
I got strange hyperscan.InvalidError: error code -1
while using scan()
function.
There nothing else in the stack trace and I cannot find any clue in google
It looks like some stupid simple error. Any Idea what it might be?
Is it possible to make the error message more elaborate?
pip install hyperscan
Collecting hyperscan
Using cached hyperscan-0.0.1.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "", line 1, in
File "c:\users\richkatz\appdata\local\temp\pip-build-a7rgfv\hyperscan\setup.py", line 74, in
setup()
File "c:\users\richkatz\appdata\local\temp\pip-build-a7rgfv\hyperscan\setup.py", line 32, in setup
'pkg-config', '--cflags', 'libhs']).decode('utf-8'),
File "c:\users\richkatz\anaconda2\lib\subprocess.py", line 567, in check_output
process = Popen(stdout=PIPE, *popenargs, **kwargs)
File "c:\users\richkatz\anaconda2\lib\subprocess.py", line 711, in init
errread, errwrite)
File "c:\users\richkatz\anaconda2\lib\subprocess.py", line 959, in _execute_child
startupinfo)
WindowsError: [Error 2] The system cannot find the file specified
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in c:\users\richkatz\appdata\local\temp\pip-build-a7rgfv\hyperscan\
Since hs_compile_ext_multi
can take a while, and since it doesn't need to hold the GIL, it might be nice to call this method with GIL released.
We're currently using v0.2.0 since we have a customized version of libhs
. Since trying to update to Python 3.10 we're seeing the following error (in a container based on python:3.10-bullseye
:
$ python3 -m pip install hyperscan==0.2.0 --no-cache-dir
Defaulting to user installation because normal site-packages is not writeable
Collecting hyperscan==0.2.0
Downloading hyperscan-0.2.0.tar.gz (13 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: hyperscan
Building wheel for hyperscan (pyproject.toml) ... done
Created wheel for hyperscan: filename=hyperscan-0.2.0-cp310-cp310-manylinux_2_31_x86_64.whl size=12566 sha256=c6665898f9cdb3b601ccbc21d0a432838502eb6644ab555e7220cf8e8a5bd341
Stored in directory: /tmp/pip-ephem-wheel-cache-scq2qfof/wheels/4d/2a/88/2f04c0e9dfd098657e8617bff17d277bfa9eb5febc26b4ba33
Successfully built hyperscan
Installing collected packages: hyperscan
Successfully installed hyperscan-0.2.0
$ python3
Python 3.10.11 (main, Apr 5 2023, 23:35:11) [GCC 10.2.1 20210110] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import hyperscan
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.10/site-packages/hyperscan/__init__.py", line 5, in <module>
from hyperscan._hyperscan import *
ModuleNotFoundError: No module named 'hyperscan._hyperscan'
>>>
Upgrading to v0.4.0 fixes the problem, but we can't use it because we require dynamically linking libhs
. I suppose this is either a bug report for the old version or a feature request for dynamic linking support in the newer version?
Since today, after installing hyperscan 0.1.5 on Python 3.6.9 (Ubuntu 18.04), importing hyperscan results
in an ImportError.
My Hyperscan package versions are:
The error:
import hyperscan
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/tmp/test3/lib/python3.6/site-packages/hyperscan/__init__.py", line 5, in <module>
from hyperscan._hyperscan import *
ImportError: /tmp/test3/lib/python3.6/site-packages/hyperscan/_hyperscan.cpython-36m-x86_64-linux-gnu.so: undefined symbol: hs_compile_lit_multi
Occurs with hyperscan-0.1.5-cp36-cp36m-manylinux2014_x86_64.whl
.
I noticed that this file was updated recently (11-12-2020), so I thought that might be the cause.
Does not occur with hyperscan-0.1.5-cp36-cp36m-manylinux1_x86_64.whl
Also does not occur with hyperscan-0.1.5-cp38-cp38-manylinux2014_x86_64.whl
on a machine with Python 3.8.5 (Ubuntu 20.04).
Do you know of any things that might cause this?
Hello,
First of all thank you for making this library, it has been very useful!
I seem to have found a segmentation fault bug. The database compile function breaks when the number of patterns provided reaches somewhere between 522000 and 523000 (on my machine at least). This number is consistent and always the same, and does not seem to vary with respect to the complexity of the patterns. Note that this is not an issue when using the C implementation directly, nor is it a RAM / out of memory related problem.
Here is a minimal reproducible example:
import hyperscan
import numpy as np
db = hyperscan.Database()
n = 521000
# generate `n` patterns, each of 4 bytes written in hex format (e.g. \\x23\\xff\\x3d\\xab) and encodes
# in bytes using utf-8 which is identical to ascii given the each character's order is lower than 128
expressions = ["\\x{:02x}\\x{:02x}\\x{:02x}\\x{:02x}".format(*list(np.random.randint(0,256,4,np.uint8))).encode("utf-8") for i in range(n)]
db.compile(expressions=expressions)
I've looked at the source code and gave it a go, however I'm extremely unfamiliar with the C-python connection API, and did not get very far.
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