danchitwood Goto Github PK

interdisciplinary_international_education

repository for educational research. more soon!

leaf_plastochron

modeling of leaf area by node

least_resistance

playing with weighted geodesic distances in grayscale images to identify venation

leaves_that_are_or_were_not

Data and code for a manuscript tentatively titled "The grapevine leaves that are (or were) not: constraints on leaf development and choosing to see what seemingly is not"

leavesunseen

Posting a written piece of work

metamorphosis

Code for an animation of Passiflora heteroblasty

midiocre

Code and data for the manuscript "The evolution of Western tonality: a corpus analysis of 24,000 songs from 190 composers over six centuries"

mozartpca

A principal component analysis of notes from the first movement of Mozart's Symphony No. 40

nrtfall2020_survey_analysis

A Linear Discriminant Analysis by type of student (bio/computational) as a function of self-reported expertise before the class, after Plants&Python, and after the class project

oaxaca_workshop

Jupyter notebook for a Plants&Python workshop held in Oaxaca

paintinghouse

Code to paint the walls of my house

passifloraleaves

Data and code used to produce figures for the morphometric analysis of Passiflora leaves

phyllotactic_lightening

shortest geodesic distance weighted paths through a grayscale phyllotaxy voronoi diagram

pinnate_leaf_modeling

Modeling leaflet and lobe shape within pinnate leaves

plant_genomics_msu_reu_2021

A repository of the Plants & Python learning materials for the Plant Genomics @ MSU REU, 2021

plantsandpython

Course material for the Foundation in Computational Plant Science course at Michigan State University

plantsandpython_2021

Class repository for 2021 Plants&Python

plantsandpython_answers

Answer keys for Plants&Python

plantsandpython_instructor

Instructor version of Plants and Python

procrustes_leaves

A repository for morphometric analysis of leaf shape

promotion_materials

For transparency into the academic promotion process, a repository with my reflective essay and teaching portfolio documents

pseudoarabidopsis

some fun with trying to interpolate leaf series in arabidopsis

radial_cannabis

a function that models Cannabis leaflets continuously

reu_2023_species_list

An updated species list from the Plants&Python 2023 REU students

reu_2023_student_plots

Subplot of grapevine leaves and sunflowers from 2023 Plant Genomics @ MSU REU participants

statements

Successful Job Applications and Grants

synthetic_leaves

A repository for data and code for the manuscript "A high resolution model of the grapevine leaf morphospace predicts synthetic leaves"

teachingtools

terroir_and_rootstock

data and analysis of grapevine leaf shape data

testing_pseudolandmarks

trying out Procrustes analysis on pseudolandmarks in python