danchitwood Goto Github PK
Name: Dan Chitwood
Type: User
Company: Michigan State University
Bio: I use my experience in plant biology creatively and with purpose within computational and educational settings.
Location: East Lansing, MI
Dan Chitwood's Projects
2021plantsandpythonplantlist
Plant list from the 2021 Plants&Python class
2022reuplantsandpythonplantlist
Plant list exercise from MSU 2022 REU
alas_de_colibri
animation of colbri wing flapping
ampelometry_backup
back up code and data for an ampelometry project
bio5702
Bio5702, Current Approaches in Plant Research, a graduate course at Washington Unviersity in St. Louis
blooms
A repository of phyllotactic animations
caerulea
a continuous model of leaf development
california_preliminary_data
preliminary data analysis for a project analyzing grapevine scion-rootstock combinations throughout california
canabigrafia
more continuous modeling of leaflet number in cannabis leaves
capsella_waves
a function that continuously models leaf lobes across the leaf
caulerpageneexpression
An interactive graphic analyzing patterns of gene expression in Caulerpa taxifolia. The code is not exactly elegant, and the data set is large, so expect some unresponsiveness and a longer load time.
color_clusters
an attempt to segment and model veins by k means color clustering and polar coordinate conversion
cropphylogeny
An interactive D3 graphic showing phylogenetic relationships between the world's crop species. Circle sizes are proportional to production tonnes in 2011 (http://faostat.fao.org/).
diefarnkrauter
A repository for tracings and analysis of fronds from Constantin von Ettingshausen "Die Farnkräuter der Jetzwelt" (1865)
digital_ampelography
a repository for digital ampelographic resources
embryophytes
A collapsible tree of 591411 plant species names. Data derived from http://www.theplantlist.org/. This is a rather large collapsible tree, and you'll have to scroll down quite a ways to begin interacting with the graphic.
explore_the_morphospace
just sharing some code exploring grapevine and passiflora leaf shape dataa
exploring_ca_wine
A quick look at data from https://www.nass.usda.gov/Statistics_by_State/California/Publications/Specialty_and_Other_Releases/Grapes/Acreage/Reports/index.php looking at historical acreage of grape varieties by county in CA. This just looks at bearing vines of cabernet sauvignon and chardonnay in 1971 and 2020
faall_2022_student_plots
A giant plt.subplot of grapevine leaf and sunflower plots made by students in the fall 2022 Plants&Python class
fall_2022_species_list
an updated species list from the Fall 2022 Plants&Python class
fall_2023_species_list
An updated species list from the Plants&Python Fall 2023 students
fall_2023_student_plots
Subplot of grapevine leaves and sunflowers from Fall 2023 Plants&Python students, from Michigan State University, Universidad Autónoma de México, and the Mekong One Health Innovation Program
girih_sunflower
creating a sunflower inspired by girih tiling
grapevine_ampelometry
The leaf shapes of 60 wine and table grape varieties are analyzed using Procrustean methods
grapevine_climate_allometry
Figures, data, and code for the manuscript "Vein-to-blade ratio as an allometric indicator of climate-induced changes in grapevine leaf size and shape"
grapevine_maracuya
a repository for some code sketching of a common analysis of grapevine and maracuyá leaf shape in a common morphospace using landmark data
grapevine_morphospace
data and code for a revised manuscript submission
grapevine_rings
a repository for code analyzing the tree rings of grapevines and their relationship to viticultural traits
grapevine_shoots
Figures, data, and code for the manuscript "Modeled changes in leaf shape across grapevine shoots discriminate species better than individual leaves and identify Vitis hybrids"
hrt841_2020
Repository of class materials for Foundation in Computational and Plant Sciences, fall 2020
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