This module contains the SHARD reconstruction software for slice-level motion correction in multi-shell diffusion MRI, as described in
Daan Christiaens, Lucilio Cordero-Grande, Maximilian Pietsch, Jana Hutter, Anthony N. Price, Emer J. Hughes, Katy Vecchiato, Maria Deprez, A. David Edwards, Joseph V.Hajnal, and J-Donald Tournier, Scattered slice SHARD reconstruction for motion correction in multi-shell diffusion MRI, NeuroImage 117437 (2020). doi:10.1016/j.neuroimage.2020.117437
$ git clone https://github.com/daljit/shard-recon.git
$ cd shard-recon
$ git clone https://github.com/mrtrix3/mrtrix3.git -b external_project_changes
$ cmake -B build -G Ninja
$ cmake --build build
$ cmake --install build --prefix=./installation/path #Installation path is arbitrary
$ export PATH=$PATH:./installation/path/bin
Contact [email protected]