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gatom's Issues

Installation error ‘is_vector_s3’ is not exported by 'namespace:tibble'

Hi,

when trying to instal the package with devtools::install_github("ctlab/gatom"), I get the following error:

* installing *source* package ‘gatom’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** tests
** byte-compile and prepare package for lazy loading
Error : object ‘is_vector_s3’ is not exported by 'namespace:tibble'

I have both sgmwcs solver and cplex solver in PATH, and here's session info:

R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.2 (Nitrogen)

Matrix products: default
BLAS/LAPACK: /nfs/software/as/el7.2/EasyBuild/CRG/software/OpenBLAS/0.2.20-GCC-6.4.0-2.28/lib/libopenblas_sandybridgep-r0.2.20.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
 [1] httr_1.3.1           compiler_3.5.0       R6_2.4.1
 [4] BiocInstaller_1.30.0 tools_3.5.0          withr_2.2.0
 [7] curl_3.1             memoise_1.1.0        knitr_1.20
[10] git2r_0.21.0         digest_0.6.25        devtools_1.13.5

Any suggestions what could be wrong?
Thanks in advance,
Anamaria

Export to Cytoscape

Hello. I try open network in Cytoscape (v. 3.5.1), but I receive error "Could not parse XGMML file" (in svg everything is fine).

Could you give me some advice how solve the problem?

M0.vs.M1.module.zip

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