csoderlund / tcw Goto Github PK

Description: For single-species (singleTCW) - similarity search against annotation databases, GO annotation, ORF finding and differential analysis. For multi-species (multiTCW) - compute similar pairs, provide statistics for pairs, compute clusters, provide statistics for clusters. Both singleTCW and multiTCW provide graphical interfaces for extensive query and display of the results.

Download TCW tarball: https://github.com/csoderlund/TCW/releases. The TCW tarball contains the executable jar files, external packages and demo files.

Documentation: https://csoderlund.github.io/TCW

Requirements: Java and MySQL to build the database and view the results. R for differential analysis.
All other external software used by TCW is contained in the package tar file. TCW has been tested on Linux and MacOS.

TCW github code: To build, see TCW/java/README.

Reference: C. Soderlund (2022) Transcriptome computational workbench (TCW): analysis of single and comparative transcriptomes. Published at BioRxiv.