Comments (2)
Hi Audy,
we are not planning to add that feature. Emirge uses the read qualities in its EM algorithm, not having them looses some information. You could just convert your FASTA to FASTQ with fake quality values.
Elmar
from emirge.
ty
from emirge.
Related Issues (20)
- Use setuptools to simplify installation HOT 1
- EMIRGE dependencies HOT 3
- EMIRGE Amplicon: n_alignments not intialized HOT 1
- got errors when running emirge_amplicon.py HOT 5
- Inordinate memory usage HOT 5
- incompatiblility of emirge_rename_fasta.py with new version of biopython? HOT 1
- IndexError: Out of bounds on buffer access (axis 1) HOT 7
- EMIRGE method choice HOT 1
- Candidate db file dead link HOT 1
- Unexpected crash at 17th iteration HOT 2
- techical difference between emirge and emirge_amplicon
- Trouble resuming from completed iteration
- EMIRGE compatible with bowtie v.1+ ? HOT 2
- emirge_makedb.py: please add an argument-option for providing pre-downloaded SILVA-db HOT 2
- EMIRGE exit without an error message after completing iteration 0. HOT 1
- Bowtie 1.2 breaks `emirge` HOT 1
- IndexError: Out of bounds on buffer access (axis 0) HOT 1
- Is this a live project? HOT 1
- emirge_makedb.py add regex to allow for Silva `SSURef_N[Rr]99_tax...`
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