This is the source code & data for the paper
Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms by Luis Pedro Coelho, Aabid Shariff, and Robert F. Murphy. DOI: 10.1109/ISBI.2009.5193098 PubMed Central (open access).
Original data is in the data/
directory. The two subfolders gnf
and
ic100
contain the files that were manually generated. In the subfolder
preprocessed-data
, you will a processed version which may be easier to use.
These are labeled integer images: the value 0 corresponds to the background, 1 is the first cell, 2 the second cell, &c.
Full citation (use this if you use this code/dataset in a paper):
@inproceedings{Coelho2009, title = {Nuclear segmentation in microscope cell images: A hand-segmented dataset and comparison of algorithms}, author = {Coelho, Luis Pedro and Shariff, Aabid and Murphy, Robert F.}, booktitle = {2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro}, doi = {10.1109/ISBI.2009.5193098}, isbn = {978-1-4244-3931-7}, keywords = {segmentation}, pages = {518--521}, year = {2009}, publisher = {IEEE}, url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5193098} }