Comments (1)
It looks like upgrading toil from 5.0.0 to the latest 5.7.1 seems to have solved my problem for anyone who runs into this problem in the future.
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Related Issues (20)
- Capture stderr with Luigi
- Redo clustering in filtering of transmap step
- ANNOTATION in the config file HOT 3
- CAT fails on cleanup when there are .nfs files HOT 1
- Error when running CAT with --augustus-cgp mode HOT 12
- Unable to find CAT dependencies HOT 5
- Improve docker installation and docs
- Potential enhancements
- TransMapPsl failed
- example data erro in TransMapPsl
- Error at filter_transmap.py HOT 2
- CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records
- Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx. HOT 1
- CAT consensus track needs filters
- CAT should not use Ensembl transcript names
- Concensue bigGenePred column name incorrect HOT 1
- CAT can't find gene duplications
- Unable to run annotation pipeline. Target h2tg000040l block 10438982-10444550 exceeds sequence length 10441754
- transMapPsl doesn't show base mismatches in browser HOT 2
- CAT should handle internal exon expansions
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