Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx. about comparative-annotation-toolkit HOT 1 OPEN

ERROR: 2023-12-15 19:25:27,281 - Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx.
WARNING: 2023-12-15 19:25:27,281 - Job failed with exit value 1: 'cgp' kind-cgp/instance-cf_rpblx
WARNING: 2023-12-15 19:25:27,302 - The job seems to have left a log file, indicating failure: 'cgp' kind-cgp/instance-cf_rpblx
WARNING: 2023-12-15 19:25:27,303 - Log from job kind-cgp/instance-cf_rpblx follows:
=========>
        [2023-12-15T19:23:30+0000] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
        [2023-12-15T19:23:30+0000] [MainThread] [I] [toil] Running Toil version 4.2.0-3aa1da130141039cb357efe36d7df9b9f6ae9b5b on host e8d60324a6c4.
        [2023-12-15T19:23:30+0000] [MainThread] [I] [luigi-interface] Loaded ['/etc/luigi/luigi.cfg', 'luigi.cfg']
        [2023-12-15T19:25:10+0000] [MainThread] [E] [root] Error talking to caching database: database is locked
        [2023-12-15T19:25:10+0000] [MainThread] [I] [toil.lib.retry] Got database is locked, trying again in 0s.
        Syntax error
        augustus: ERROR
                the parsing of /tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/tmpfpkgrhi5.tmp has been unsuccessful. Please check, whether the syntax of your input file is correct

        Traceback (most recent call last):
          File "/usr/local/lib/python3.8/dist-packages/toil/worker.py", line 368, in workerScript
            job._runner(jobGraph=jobGraph, jobStore=jobStore, fileStore=fileStore, defer=defer)
          File "/usr/local/lib/python3.8/dist-packages/toil/job.py", line 1424, in _runner
            returnValues = self._run(jobGraph, fileStore)
          File "/usr/local/lib/python3.8/dist-packages/toil/job.py", line 1361, in _run
            return self.run(fileStore)
          File "/usr/local/lib/python3.8/dist-packages/toil/job.py", line 1565, in run
            rValue = userFunction(*((self,) + tuple(self._args)), **self._kwargs)
          File "/usr/local/lib/python3.8/dist-packages/cat-2.0-py3.8.egg/cat/augustus_cgp.py", line 291, in cgp
            tools.procOps.run_proc(cmd, stdout=stdout)
          File "/usr/local/lib/python3.8/dist-packages/cat-2.0-py3.8.egg/tools/procOps.py", line 74, in run_proc
            pl.wait()
          File "/usr/local/lib/python3.8/dist-packages/cat-2.0-py3.8.egg/tools/pipeline.py", line 1157, in wait
            self.raiseIfExcept()
          File "/usr/local/lib/python3.8/dist-packages/cat-2.0-py3.8.egg/tools/pipeline.py", line 1115, in raiseIfExcept
            p.raiseIfExcept()
          File "/usr/local/lib/python3.8/dist-packages/cat-2.0-py3.8.egg/tools/pipeline.py", line 775, in raiseIfExcept
            raise self.exceptInfo[0].with_traceback(self.exceptInfo[2])
        tools.pipeline.ProcException: process exited 1: augustus --dbhints=1 --allow_hinted_splicesites=atac --extrinsicCfgFile=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/tmpxjb26nc9.tmp --species=arabidopsis --treefile=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/tmpfpkgrhi5.tmp --alnfile=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/tmpvg67zprn.tmp --dbaccess=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/tmp594gimeh.tmp --speciesfilenames=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec/e8d60324a6c4.155185.3206550652.tmp --softmasking=1 --exoncands=1 --alternatives-from-evidence=0 --/CompPred/logreg=on --printOEs=1 --/CompPred/outdir=/tmp/node-5a821e47-0f29-43d4-9510-0990e020e818-1686a2e7-cb89-40a7-973b-a04a5d9b82be/tmpy_pptd2k/07778579-10f8-4ed5-9f57-9d43f53e52ec --printSampled=true