comorment / ldpred2_standalone Goto Github PK
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License: GNU General Public License v3.0
Add step to build and push .sif files to the GitHub container registry in workflow file.
Build and distribute containers using build/push action onto GH container registry
the current docker doesn't work on MacOS, trying to fall back to a plink2-plain
binary that doesn't exist:
% docker run -it --mount type=bind,source=$PWD,target=$PWD ldpred2 plink2 --version
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
+ /usr/lib/plink2/plink2-plain --version
/usr/bin/plink2: line 32: /usr/lib/plink2/plink2-plain: No such file or directory
Keep project dependencies (git, git-lfs, ... ) in a environment.yml file for easier project set up using conda or similar
One can build the singularity container once and push with multiple tags:
oras push ghcr.io/comorment/ldpred2:tag1,tag2,tag3 ldpred2.sif
Currently not building and pushing documentation onto readthedocs.io. Should be done
update files
Describe the bug
Can't push both Docker images and .sif file to ghcr.io/comorment/ldpred2,
as oras push ...
replaces Docker manifest, preventing docker pull ...
Add Python env from mix3r to container
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