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License: GNU General Public License v3.0
Plink is needed by bigsnpr: https://cran.r-project.org/web/packages/bigsnpr/index.html
Describe the solution you'd like
Add PRSice-2 software from https://choishingwan.github.io/PRSice/
Describe the solution you'd like
Add SBayesR (GCTB) software from https://cnsgenomics.com/software/gctb/#Overview
For demo purposes, adapt the tutorial/demo code from https://privefl.github.io/bigsnpr/articles/LDpred2.html and include it here as well as required data files.
Software to be added
Edit: Rstudio Desktop was a suggested addition (removed). I think using rstudio-server
would be preferable as it is already included via the rocker/verse
base image and should work with both Singularity and Slurm HPC jobs as documented here: https://rocker-project.org/use/singularity.html. Main reason is including GUI applications in built containers would inflate their size a lot.
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