common-workflow-lab / galaxy2cwl Goto Github PK

mba-2:galaxy2cwl romanvg$ ./galaxy2cwl.py tools-devteam/tools/bwa/bwa-mem.xml
Traceback (most recent call last):
  File "./galaxy2cwl.py", line 399, in <module>
    sys.exit(main(sys.argv[1:]))
  File "./galaxy2cwl.py", line 373, in main
    cwl = galaxy2cwl(dom.documentElement, basedir)
  File "./galaxy2cwl.py", line 221, in galaxy2cwl
    expand_macros(tool, toks, expands)
  File "./galaxy2cwl.py", line 203, in expand_macros
    expand_macros(e, toks, expands)
  File "./galaxy2cwl.py", line 199, in expand_macros
    for mac in list(expands[e.getAttribute("macro")].childNodes):
KeyError: u'reference_source_conditional'