Code Monkey home page Code Monkey logo

amis's Introduction

AMIS

A Mouse Image Server

  1. http://amis.docking.org/loadimages This script will load all tif files from ‘/nfs/ex9/idg-images/’ including all sub folders. If .tif file is already in our database it sill skip those files. If .tif file is new and not stored our database, it will store data by parsing file name. If there is no jpg file with same file name in the same directory, script will lookup jpg file from ‘/nfs/ex9/idg-images/jpegs/’ folder and it will move the jpeg files from this directory if there is jpeg file with same name.

  2. http://amis.docking.org/TAS2R4/thymus or http://amis.docking.org?gene=TAS2R4&organ=thymus It will automatically select gene and organ that specified in the URL http://amis.docking.org/{gene}/{organ}

Returns all data without any pagination http://amis.docking.org/slices?per_page=-1

Returns all data without any pagination and filter by gene http://amis.docking.org/slices?per_page=-1&gene=GPR85

There are 2 types of format that script loads.

# Histological Cleared
# nomenclature Value nomenclature Value
1 gene GPR85 gene GPR85
2 experiment Ai9 experiment Ai9
3 genotype_gene 1 genotype_gene 1
4 genotype_reporter 1 genotype_reporter 1
5 mouse_number 1540 mouse_number 1
6 sex m sex M
7 age p30 age p30
8 manipulation_type reporter-gene-cross manipulation_type reporter-gene-cross
9 organ heart organ brain
10 UBERON 948 UBERON 955
11 orientation nd orientation c
12 slde_number 00001 slice_id 812
13 slice_id 3 z_step_size 1 .26675
14 objective 10x objective 20x
15 instrument Olympus instrument LSM
16 wavelength DAPI wavelength tdTomato
17 checksum md5 checksum md5

If you want to download as a json format. You need to add .json after slices as below. http://amis.docking.org/slices.json?per_page=-1

amis's People

Contributors

chinzod avatar dependabot[bot] avatar

Watchers

James Cloos avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.