Comments (3)
I'm not sure what the purpose of step (4) is here. Also in step (5) you only need to use a specific redis password if you want to use multiple ray clusters on one node (e.g., multiple processes with independent ray clusters or multiple users utilitizing ray.) You can just type ray start --head --num-cpus X
(because fingerprints.py
does not use GPU.)
As for hanging, a few questions. is this persistent? What happens if you run it multiple times? Can you use ray on this computer? Can you see that the ray cluster is responsive? Is the fingerprint file HDF5 file created at all?
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I worked with the IT people here today, in the end we realized that my download (from a month or two ago) contained scripts that were different from what you can download today; there must have been some incompatibilities that I couldn't otherwise detect. I deleted and redownloaded everything, and now this works per normal. Thanks for your help though.
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Glad you were able to sort it out!
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Related Issues (20)
- MPN model error HOT 3
- unable to reproduce results HOT 5
- Bug in explorer HOT 14
- Y_pred.npy file HOT 3
- docking for objectives HOT 7
- bug in fingerprints.py
- test on in-house data, result is bad HOT 5
- can you please provide an example config file that use docking rather than lookup? HOT 1
- molpal crush due to invalid smiles HOT 1
- [QUESTION]: Recommended paramaters for molecule screen HOT 1
- what's your take on random sampling? HOT 1
- [QUESTION]: HOT 6
- how to handle tautomers? HOT 2
- [QUESTION]: training dataloader is currently defined with shuffle=False. Is this intentional? HOT 1
- [BUG]: HOT 4
- [QUESTION]: Are docking scores for 2.1 million member HTS Collection (“Enamine HTS”) against 4UNN PBB available? HOT 3
- [BUG]: unable to run molpal in docking objective HOT 1
- [BUG]: Not compatible with the latest Ray/Pytorch-Lightning versions HOT 1
- [QUESTION]: Basic MolPal usage
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