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compare-cnprep-results

Visualization function to compare results from CNprep

concrete-autoencoders

courseplanningwebtool

A new and easy way to track and visualize your course planning.

crispr-ambiguous-mapping

CRISPR guide mapping that is aware of self-editing at the protospacer. Takes an unbiased "hamming" approach.

crispr-be-sensor

Parsing of Sherwood BE-Sensor amplicon-seq FASTQs

crispr-be-sensor-deprecated

Deprecated. See CRISPR-ambiguous-mapping for mapping code

crispr-library-prep

Some helper functions for planning library prep for CRISPR screens

crispr-shrinkage

crispr-surf

crispr_pegrna_design

docker-anaconda-bioinformatics-tools

docker-python-bioinformatics-tools

Docker image for python bioinformatics libraries

drosophila-id-converter

Take a protein accession number or a gene database ID and retrieve the corresponding gene name

facets_nonmatching_test

Using TCGA WES data to test how well FACETS can analyze cancer sequences with a non-matching normal reference exome relative to a matching normal reference exome.

facets_write_files

Write FACETs files to TSV file in structured directory tree

fastapi-realworld-example-app

Backend logic implementation for https://github.com/gothinkster/realworld with awesome FastAPI

fly-transcription

Web-based search tool for discovering similar transcription factors from a gene within the Drosophila and Anopheles genome

fly-transcription-corranalysis

Determine the correlation of a Drosophila melanogaster gene with other genes in the genome based on RNA expression data. The following is "research code", not production software code.

fly-transcription-testscripts

Project to contain all the node test scripts (not unit tests) for the fly-transcription main project

flycage

A modern web tool to find genes with similar expression

gene-set-feature-scoring

Score gene set features

glmpca

hackapp

hackapplication

hackdayproject

heart-disease-glm

Ordinal logistic regression of Cleveland Clinic Foundation heart disease dataset.

heroku-badge

Simple heroku badge that serves an success or failed image depends on the heroku response.

hscc-car-buying-project

Example project for teaching the HSCC Car Buying Project programming concepts.

intermine

A powerful open source data warehouse system

intermine-ws-client

Own modifications to flymine's intermine Java web service client.