Name: Cyberinfrastructure for Network Science Center at Indiana University
Type: Organization
Bio: CNS is a visualization research center at IU. Our projects cover a broad range of data analysis and visualization topics.
Location: Bloomington, IN
Blog: cns.iu.edu
Cyberinfrastructure for Network Science Center at Indiana University's Projects
A repo to capture cell embedding visualizations
Cell Neighborhood Analysis, based on John Hickey's code
RUI locations for CTPop
Supporting information page for the HRApop paper
HRA CTPop Visualizations
Supporting information page for the "Human BioMolecular Atlas Program (HuBMAP): 3D Reference Atlas Construction and Usage" paper
GPU-powered API to generate corridors (GLB) for RUI locations
A repository for summer work on cell type heterogeneity
Cell Type summary files for multiplexed (mx) antibody-based imaging data.
Supporting information page for the "HRA CxG Paper" paper
HRA-DS: The Human Reference Atlas Design System
Python code to pick raffle winners at random. Email addresses are not shared here
Supporting information page for the HRAlit paper
Supporting information page for the FTU Explorer paper (in progress)
Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper
Experimental code to generate RUI locations for the CFDE IU/GTEx pilot
Download HRA 3D Reference Organ GLB files
Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB
Code to get HuBMAP metadata and generate experimental data mapping to the HRA
Computing cell type populations for interactive FTU Explorer.
A repository to hold Supplemental Information for the HRA Knowledge Graph paper
HRAlit v0.5
Blender files and models for 5x5 mouse registrations
hra-multi-lod (CGAL Version): Derive level of detail models from a GLB file
Segmentation pipeline for multiple Functional Tissue Units (FTUs) based on code from the Kaggle #2 Competition.
A repo to hold work on name disambiguation in HRAlit
HRA Node Distance Visualization Web Component
Experimental code for labeling cell types in multiplexed imaging data based on OMAPs and ASCT+B Tables.
3D and 2D assets for the HRA Organ Gallery in VR