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saishilpa89mirzadeh_cal's Issues
Diet/temp/other transitions
Need ability to demarcate changes in diet/temp/other at user-specified point in recording
Issue with cumulative calculations in Cal_Clean
Noticed issue where cumulative values for the entire experiment are miscalculated.
Plots needed
- Hourly food intake
- cumulative food intake
- Foodintake normalized to BW
- Energy Expenditure
- Cumulative EE
- Energy Balance
- Cumulative EB
- EE normalized to BW
- EB normalized to BW
- Locomotion
Colors are hard-coded in scale_fill_manual
In the tsplot function created in Cal_Plot.qmd, there remains a call to scale_fill_manual where the colors for chABC and HIchABC are hard-coded. Need to figure out how to change this so that turquoise and darkorange are applied to SEM ribbon no matter the grouping.
exp_day is computed from calendar day, instead of counting up from start of recording
Lines 89-102 of Cal_Clean.R.
This causes some issues in trying to trim days with <24h recording from photoperiod-averaged plots. Working on a fix.
df %<>%
mutate(ZT = plyr::mapvalues(hour, from = (0:23), to = c(18:23,0:17)),.before = Sex) %>%
mutate(Photoperiod = as.factor(plyr::mapvalues(ZT, from = c(0:23), to = c(rep(1,12),rep(0,12)))),.before = ZT) %>%
mutate(exp_day = plyr::mapvalues(day, from = unique(day), to = 1:length(unique(day))),.after = DateTime) %>%
rename(VO2 = VO2_M,
Animal = ID_Code,
VCO2 = VCO2_M,
EE = kcal_hr_M,
RER = RER_M,
FoodIn.cum = FoodInA_M,
WaterIn.cum = WaterInA_M,
AllMeters = AllMeters_R,
BodyMass = BodyMass_M,
VH2O = VH2O_M)
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