channels:
 - conda-forge
 - bioconda
 - defaults
dependencies:
# - bowtie2=2.5.0
# - fastqc=0.11.9
 - python=3.11
# - trim-galore=0.6.7
 - pip
 - pip:
#   - dreem @ git+https://github.com/yvesmartindestaillades/dreem.git
   - dreem @ git+https://github.com/cjgunnar/dreem_yves_martin

conda env create -n dreem_yves --file env.yml && \
conda activate dreem_yves

cd path/to/where/you/want/dreem
git clone https://github.com/yvesmartindestaillades/dreem
cd dreem
python3 -m venv venv
source bin/activate
pip install -r requirements.txt
pip install .