The documentation of our scripts is located in the corresponding source code: You can view the source code on GitHub by following the links to the scripts.

• Python scripts require a recent version of the Python 3 interpreter.
• R scripts require a recent version of R. The installation of RStudio is recommended.

phenoptr, phenoptrReports are part of the Akoya Biosciences Phenoptics™ family of Quantitative Pathology Research Solutions.

premessa is an R package from the Parker Institute for Cancer Immunotherapy for pre-processing of flow and mass cytometry data, that includes panel editing/renaming for FCS files, bead-based normalization and debarcoding .