Chris Keefe's Projects
QIIME 2 plugin for machine learning prediction of sample data.
A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler
Definitions of common QIIME 2 types.
vsearch plugin for QIIME 2
Command line interface for QIIME 2
Prototype interface for automatically generating CWL tools from QIIME 2 actions
Prototype interface for automatically generating Galaxy tools from QIIME 2 actions
Linter for official QIIME 2 software.
Prototype graphical user interface for QIIME 2
Design template package for QIIME 2 Plugins
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
Official repository for the QIIME 2 framework.
QIIME 2 project front page
Qiita - A multi-omics databasing effort
Poster: Developing a QIIME 2 plugin - a simple annotation for robust tools
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
Scipy library main repository
Ensemble of HMM methods (SEPP, TIPP, UPP)
A Sublime Text Editor Installer made in shell script for the 2.0.1 version
Notes/Code snippets from "Learn Rust With Entirely Too Many Linked Lists"
A sample R package build for CS599 Unsupervised Learning
Another sample R package build for CS599 Unsupervised Learning
Early results for Urdea Collaborative Research Award-funded Ileum microbiome study (16s/qPCR)
Static hosting for q2view, go here for source code ->