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Hi, I'm Chris! šŸ‘‹

  • šŸ”­ I'm building software for research automation and scientific reproducibility šŸ”¬
  • šŸŒ± Iā€™m learning TypeScript, CDK, data-intensive web dev, and the Norwegian language šŸ‡³šŸ‡“
  • šŸ’¬ Ask me about Python, Git, Linux, QIIME 2, microbiome bioinformatics, and home-brewed soda šŸ¾

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Chris Keefe's Projects

q2-shogun icon q2-shogun

A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler

q2cli icon q2cli

Command line interface for QIIME 2

q2cwl icon q2cwl

Prototype interface for automatically generating CWL tools from QIIME 2 actions

q2galaxy icon q2galaxy

Prototype interface for automatically generating Galaxy tools from QIIME 2 actions

q2lint icon q2lint

Linter for official QIIME 2 software.

q2studio icon q2studio

Prototype graphical user interface for QIIME 2

q2view icon q2view

A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

qiime2 icon qiime2

Official repository for the QIIME 2 framework.

qiita icon qiita

Qiita - A multi-omics databasing effort

sacmda19 icon sacmda19

Poster: Developing a QIIME 2 plugin - a simple annotation for robust tools

scikit-bio icon scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

scipy icon scipy

Scipy library main repository

sepp icon sepp

Ensemble of HMM methods (SEPP, TIPP, UPP)

unsuplp1 icon unsuplp1

A sample R package build for CS599 Unsupervised Learning

unsuplp2 icon unsuplp2

Another sample R package build for CS599 Unsupervised Learning

urdea-poster icon urdea-poster

Early results for Urdea Collaborative Research Award-funded Ileum microbiome study (16s/qPCR)

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