Code associated with work on the Integral Projection Model (IPM) for the Hunder trout. The following list provides all filenames and which sections and figures in the paper (Nater et al. 202X) they are associated with. Each code file begins with a short description of the contents, so refer to code files for more information.

The paper can be found here: TBA

Trout_LifeCycle_IPM.pdf

• Figure 1

HunderTroutIPM_IPM_Building.R

HunderTroutIPM_IPM_Building_mO2Scenarios.R

HunderTroutIPM_BasicProjections.R

• Sections 2.3.1, 2.3.2, & 3.1
• Figures 2 & S1.1

HunderTroutIPM_SensitivityAnalysis_withStocking.R

• Sections 2.3.3 & 3.2
• Figures 3 & S1.2

HunderTroutIPM_ElasticityAnalysis_withStocking.R

• Sections 2.3.3 & 3.2
• Figure S1.3a)

HunderTroutIPM_SensitivityAnalysis_withoutStocking.R

• Sections 2.3.3 & 3.2
• Figure 3b)

HunderTroutIPM_ElasticityAnalysis_withoutStocking.R

• Sections 2.3.3 & 3.2
• Figure S1.3b)

HunderTroutIPM_DiscreteHarvestScenarios.R

• Sections 2.3.4 & 3.3
• Figures 4 & S1.4

HunderTroutIPM_ContinuousScenarios_mH&mO1.R

• Sections 2.3.4 & 3.3
• Figures 5a) & S1.5

HunderTroutIPM_ContinuousScenarios_mH&mO2.R

• Sections 2.3.4 & 3.3
• Figures 5b) & S1.7