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biocheat's Introduction

BioCheat

Toolbox for gene analysis http://biocheat.wisewolf.org

It uses Flask, React.js, D3.js, Require.js and some open source javascript libraries.

NOTICE: There's so many things to do alone. Every interests, contributes, opinions, requests and emails are welcom.

[email protected]

Implemented Tools

Random Base Sequence Generator

Random base sequence genderator can regulate sequence length and GC content. http://biocheat.wisewolf.org/random_base_generator

CpG Island Detector

CpG island detector from FASTA format. http://biocheat.wisewolf.org/CpG_island

Base Skew Plotter

Tool for calculate and plot skew between two bases. http://biocheat.wisewolf.org/base_skew

Origin of Replication Finder

Tool for find ori position using GC skew. Scanning window will be fixed half of length of input sequence. http://biocheat.wisewolf.org/ori_finder

Exon Intron Finder

Using exon's spectral property that has peak at (2/3)ฯ€ when Fourier transformed. It uses DCT to spectral analysis. http://biocheat.wisewolf.org/exon_intron

Z Curve Plotter

Z curve plotter using Plotly.js. http://biocheat.wisewolf.org/z_curve

Codon Analyzer

Tool for codon analyzing. It provides translattion of codon sequence to amino acid sequence and calculattion of codon ratios and relative codon usage. http://biocheat.wisewolf.org/codon_analyzer

Amino Sequence to Codon Converter

Tool for convert amino acid to codon according to relative codon usage and translation table. http://biocheat.wisewolf.org/amino_seq_to_codon

Calculate Base Length From Electrophoresis Result

Tool for estimate length of base from electophoresis marker. http://biocheat.wisewolf.org/base_len

Calculate Restrict Map From Electrophoresis Result

Tool for calculate restrict map from electrophoresis result of double digest and partial digest.(Partial digest not implemented) http://biocheat.wisewolf.org/restrict_map

biocheat's People

Contributors

elwlwlwk avatar

Watchers

James Cloos avatar Chiwan Song avatar

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