chenhungling / caimangui Goto Github PK
View Code? Open in Web Editor NEWGUI for visualizing CaImAn processed imaging data.
License: GNU General Public License v3.0
GUI for visualizing CaImAn processed imaging data.
License: GNU General Public License v3.0
Hi @chenhungling,
Does the GUI work on 3D data? I have 3D data and I'm getting this error when I try to load it:
Can we solve this?
(caiman) C:\Users\au711234\CaimanGUI\gui>python caiman_gui.py
Traceback (most recent call last):
File "C:\Users\au711234\CaimanGUI\gui\caiman_gui.py", line 126, in <lambda>
openHDF5.triggered.connect(lambda: self.load_data(click=True))
File "C:\Users\au711234\CaimanGUI\gui\caiman_gui.py", line 243, in load_data
img_components = [A[:,i].reshape(dims,order='F').toarray() for i in range(A.shape[1])]
File "C:\Users\au711234\CaimanGUI\gui\caiman_gui.py", line 243, in <listcomp>
img_components = [A[:,i].reshape(dims,order='F').toarray() for i in range(A.shape[1])]
File "C:\ProgramData\Anaconda3\envs\caiman\lib\site-packages\scipy\sparse\_base.py", line 161, in reshape
shape = check_shape(args, self.shape, allow_1d=is_array)
File "C:\ProgramData\Anaconda3\envs\caiman\lib\site-packages\scipy\sparse\_sputils.py", line 362, in check_shape
raise ValueError('matrix shape must be two-dimensional')
ValueError: matrix shape must be two-dimensional
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