cgplab / radar Goto Github PK
View Code? Open in Web Editor NEWA tool to perform comprehensive analysis of high-dimensional radiomic datasets
License: MIT License
A tool to perform comprehensive analysis of high-dimensional radiomic datasets
License: MIT License
Package mRMRe has recently been removed from CRAN. Not sure if this has to do with a long-standing bug where mRMRe may return erroneous results for large dataset. Bummer.
I have got another error as follow: Error in boxplot.default(split(mf[[response]], mf[-response], drop = drop, :
invalid first argument
The features have been extracted by Pyradiomics. I have the same error when putting the software example (LungExample) in the code.
Please advice.
Hi,
Recently, I'm trying to analyze T1, T2, T1enhance...etc MRI sequences and their radiomics features,which means one case has at least 3 or 4 csv-files of the same features' name(1 csv file /each MRI sequence, gernerated by Pyradiomics),so I manually added a suffix like '_T1_ROI', '_T2_ROI'(using python). After I fused 2 csv-file (for example, T1 and T2 's features ) into 1 csv-file,the program failed to load that csv-file.
Here is my Question:
I think I should formatting the csv-file first, but (Question one) is it possible for RadAR to analyze such kind of complex datasets(muti-sequences MRIomics features)?
And even successfully loaded 1 csv, it seems that I dont have the 'Normailized' and 'Scale' data. (Question two) How to gernerate those kind of data in RadAR and how those data store in the Rdata?
(Question three) how to format my csv-file ?(RadAR cant load that csv, i already have 'feature_table' kind of csv)
Ye
Hi,
Thanks for your comprehensive package for radiomics feature analysis.
I have a problem when I want to view the correlation matrix of features by heatmap. Below you can see the error, although there is no NaN or inf or 0 value in my extracted features by Pyradiomics.
Please advice.
Error in hclust(d, method = method) :
NA/NaN/Inf in foreign function call (arg 10)
Just I minor typo ... probably due to copy & paste
In the vignette you wrote
rdr <- import_radiomic_table(dir = "PATH/TO/RADIOMIC_TABLE")
and the argument for this function is file
instead of dir
import_radiomic_table <- function (file = NULL)
Juan
PS\ One of my PhD is going to do a PR for another issue you have with boxplots
I got this error:
> library(RadAR)
> lung1_rdr <- normalize_feature_values(rdr = lung1_rdr,
+ which_data = "scaled")
Error in t.default(data) : argument is not a matrix
Do you know what I am doing wrong?
Hi,
first of all I would like to congratulate you for the excellent R library you have created! it is really useful.
I was wondering whether you could create a set of function for RIA (https://cran.r-project.org/web/packages/RIA/index.html) since it is another really nice R package to compute radiomic features like pyradiomics, 3Dslicer or LifeX. The advantadge would be that if so, one could integrate everything in a single R pipeline.
I know that I can use import_radiomic_table()
but it would be nice to integrate RIA into RadAR as you did with pyradiomics.
Thanks
Juan
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.