Norwegian University of Science and Technology (NTNU)
Trondheim, Norway
May, 2023
Repository for master thesis supplementary information.
An overview of the contents is given in the table below.
| No. | Description | Path |
|---|---|---|
| 1 | Raw and cleaned allosteric data from BRENDA | datafiles\interactions |
| 2 | Supporting files for mapping and filtering interaction and feature data | datafiles\support |
| 3 | Files of protein sequence features | datafiles\features |
| 4 | Files used for creating and annotating the phylogenetic tree | datafiles\phylotree |
| 5 | Files of results from enrichment analysis and validation | datafiles\results |
| 6 | Script for cleaning interaction data from BRENDA | data download and cleaning\BRENDA_data.ipynb |
| 7 | Script for downloading protein sequence features | data download and cleaning\download_features.ipynb |
| 8 | Scripts for creating and annotating phylogenetic tree | analysis\data_analysis\phylogenetic_tree |
| 9 | Script for analysing interaction data | analysis\data_analysis\BRENDA_analysis.ipynb |
| 10 | HTML file of interactive network | analysis\data_analysis\network.html |
| 11 | Scripts for conducting enrichment analysis and assessing results | analysis\enrichment_analysis |
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