Comments (10)
For age 2.2., the current message is " Warning: Model Age.2.2 BMI stratified has strata (bmi_grp=4) with less than 15 observations. Model will not be run"
The second sentence here should read instead "Model will not be run for this stratum."
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Updated to include milestone label
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The model below:
Exposure: Age
Outcome: All metabolites
Adjustment: multivitamin bmi_grp smk_grp
returns an error message that is likely to be uninformative to user:
" argument 'pattern' has length > 1 and only the first element will be used"
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this is actually a bug steve, good catch! i will fix this
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for multiple adjustment vars, it was only taking the first one, i updated the code so that all vars are matched correctly and included adjspec to output to show what adjustments were added to model
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@kailingchen please redeploy
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addressed with this commit c35674a
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There are some wordsmithing issues we could fix, but in general I am satisfied with COMETS 1.3 as it stands and think we should move to production.
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I would like to propose that we change this to a 1.4 milestone.
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Warning fixed.
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Related Issues (20)
- Warning: bad alloc HOT 2
- COMETS 1.4. Correlations between metabolites with long names not currently working HOT 15
- COMETS 1.3. N not lining up (GUI display only) HOT 2
- COMETS 1.3. Amazon queue not managed correctly if 3+ jobs HOT 3
- COMETS 1.5. For metabolites that are dropped, indicate somehow that this happened HOT 2
- 1.5 Warning: "missing value where 'true/false' needed" HOT 1
- 1.4 hmdb_id + cohort options + subject data from BWHHS
- Error message for hmdb_id on Integrity Check HOT 1
- COMETS 1.4. Adjustment w/ BMI in sample file not working HOT 3
- COMETS 1.4. Integrity check fails when comp-id has characters HOT 2
- COMETS 1.4. Add "metabolites", "varmap", "models", table1 tabs to output harmonization file
- COMETS 1.5. Adjusting for metabolites in batch mode
- COMETS 1.5. Adjusting for a metabolite when "all metabolites" is an outcome HOT 3
- COMETS 1.4. In "DESCR" file produced when running "all models", metabolite array positions given instead of names HOT 4
- COMETS 1.4. When a metabolite is adjusted for, its array position is shown in adjvars instead of its name HOT 6
- COMETS 1.5. Fix warning messages to provide more useful feedback. HOT 1
- Error Message: Can't join on 'x__3' x 'x__3' because of incompatible types (character / numeric)
- COMETS 1.5. Clarify metabolite_id vs. metabid and which is required in the "Metabolites" tab
- Vignette error HOT 1
- subselect is no longer available on CRAN
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