Comments (3)
Note that this runs when adding race_grp as another adjustment (screenshot below). To me this suggests a mistake in array processing somewhere, possibly triggered if eigenvalues suggest dropping BMI when there is only one variable in the array.
If this is indeed the issue, it likely did not come up before because all models (except one) used multiple covariates. The only exception was a gender-adjusted model, and gender is not likely to be dropped based on eigenvalues.
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One more thing: This error also occurs on the production site, and so is not an artifact of recent changes.
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Fixed in recent tests: issue now closed.
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Related Issues (20)
- COMETS 1.5 - Harmonization file variable defintions: COMP_ID.Cohort, COMP_ID.Comets, and COMP_ID HOT 3
- Warning: bad alloc HOT 2
- COMETS 1.4. Correlations between metabolites with long names not currently working HOT 15
- COMETS 1.3. N not lining up (GUI display only) HOT 2
- COMETS 1.3. Amazon queue not managed correctly if 3+ jobs HOT 3
- COMETS 1.5. For metabolites that are dropped, indicate somehow that this happened HOT 2
- 1.5 Warning: "missing value where 'true/false' needed" HOT 1
- 1.4 hmdb_id + cohort options + subject data from BWHHS
- Error message for hmdb_id on Integrity Check HOT 1
- COMETS 1.4. Integrity check fails when comp-id has characters HOT 2
- COMETS 1.4. Add "metabolites", "varmap", "models", table1 tabs to output harmonization file
- COMETS 1.5. Adjusting for metabolites in batch mode
- COMETS 1.5. Adjusting for a metabolite when "all metabolites" is an outcome HOT 3
- COMETS 1.4. In "DESCR" file produced when running "all models", metabolite array positions given instead of names HOT 4
- COMETS 1.4. When a metabolite is adjusted for, its array position is shown in adjvars instead of its name HOT 6
- COMETS 1.5. Fix warning messages to provide more useful feedback. HOT 1
- Error Message: Can't join on 'x__3' x 'x__3' because of incompatible types (character / numeric)
- COMETS 1.5. Clarify metabolite_id vs. metabid and which is required in the "Metabolites" tab
- Vignette error HOT 1
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