Comments (2)
steven-moore
commented on June 24, 2024
By updating the UID file on our backend and just using the existing harmonization functionality, this issue should be resolved. I will test and verify. COMETS-Analytics does not need to explicitly do anything with the new field, as long as it passes it on.
from r-cometsanalytics.
steven-moore
commented on June 24, 2024
Further note: The above is only true if the algorithm knows which column of the UID file to look at, but I'm not entirely sure that it does at present. Nevertheless, it is true that a more up-to-date UID file will improve the accuracy of the match. I propose that we focus for 1.4 on perfecting the UID update process and table this issue of perfecting the harmonization algorithm (using the new column of information) for 1.5.
from r-cometsanalytics.
Related Issues (20)
- COMETS 1.5 - Harmonization file variable defintions: COMP_ID.Cohort, COMP_ID.Comets, and COMP_ID HOT 3
- Warning: bad alloc HOT 2
- COMETS 1.4. Correlations between metabolites with long names not currently working HOT 15
- COMETS 1.3. N not lining up (GUI display only) HOT 2
- COMETS 1.3. Amazon queue not managed correctly if 3+ jobs HOT 3
- COMETS 1.5. For metabolites that are dropped, indicate somehow that this happened HOT 2
- 1.5 Warning: "missing value where 'true/false' needed" HOT 1
- 1.4 hmdb_id + cohort options + subject data from BWHHS
- Error message for hmdb_id on Integrity Check HOT 1
- COMETS 1.4. Adjustment w/ BMI in sample file not working HOT 3
- COMETS 1.4. Integrity check fails when comp-id has characters HOT 2
- COMETS 1.4. Add "metabolites", "varmap", "models", table1 tabs to output harmonization file
- COMETS 1.5. Adjusting for metabolites in batch mode
- COMETS 1.5. Adjusting for a metabolite when "all metabolites" is an outcome HOT 3
- COMETS 1.4. In "DESCR" file produced when running "all models", metabolite array positions given instead of names HOT 4
- COMETS 1.4. When a metabolite is adjusted for, its array position is shown in adjvars instead of its name HOT 6
- COMETS 1.5. Fix warning messages to provide more useful feedback. HOT 1
- Error Message: Can't join on 'x__3' x 'x__3' because of incompatible types (character / numeric)
- COMETS 1.5. Clarify metabolite_id vs. metabid and which is required in the "Metabolites" tab
- Vignette error HOT 1
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