Comments (10)
Also "Metabolites" tab too.
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Are we just supposed to be copying the two of the tabs from the input to new files in the archive? Should we just include the input file in the output archive?
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I have tested, and the whole input file is currently being passed through. This is the wrong functionality. The "SubjectMetabolites" and "SubjectData" tabs should first be extracted, then the remaining tabs should be passed onward. This is a critical priority.
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Looks like I accidentally removed the code that was saving the modified input at some point. I've added it back in and reworked the code so that it should no longer be possible to package up the original input file.
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(This is on dev, since I've been informed that test may be in use at the moment.)
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Upon test now.
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Resolved! Thanks--this is perfect. Issue is closed.
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Related Issues (20)
- Warning: bad alloc HOT 2
- COMETS 1.4. Correlations between metabolites with long names not currently working HOT 15
- COMETS 1.3. N not lining up (GUI display only) HOT 2
- COMETS 1.3. Amazon queue not managed correctly if 3+ jobs HOT 3
- COMETS 1.5. For metabolites that are dropped, indicate somehow that this happened HOT 2
- 1.5 Warning: "missing value where 'true/false' needed" HOT 1
- 1.4 hmdb_id + cohort options + subject data from BWHHS
- Error message for hmdb_id on Integrity Check HOT 1
- COMETS 1.4. Adjustment w/ BMI in sample file not working HOT 3
- COMETS 1.4. Integrity check fails when comp-id has characters HOT 2
- COMETS 1.4. Add "metabolites", "varmap", "models", table1 tabs to output harmonization file
- COMETS 1.5. Adjusting for metabolites in batch mode
- COMETS 1.5. Adjusting for a metabolite when "all metabolites" is an outcome HOT 3
- COMETS 1.4. In "DESCR" file produced when running "all models", metabolite array positions given instead of names HOT 4
- COMETS 1.4. When a metabolite is adjusted for, its array position is shown in adjvars instead of its name HOT 6
- COMETS 1.5. Fix warning messages to provide more useful feedback. HOT 1
- Error Message: Can't join on 'x__3' x 'x__3' because of incompatible types (character / numeric)
- COMETS 1.5. Clarify metabolite_id vs. metabid and which is required in the "Metabolites" tab
- Vignette error HOT 1
- subselect is no longer available on CRAN
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