caravagnalab / ctree Goto Github PK

Hello @caravagn and @l0ka

It looks like there was some changes from 51b8239 that broke ClonEvol_surrogate(). At line 248, TR no longer calls CCF_phylogeny_univariate() because those lines were moved into the else-if statement.

Unfortunately, I don't think anyone would be able to create trees using the latest version of the code.

Best,
Michael

Hi, giulio:

When I run the example code of ctrees, there is an unexpected error. The x is empty when successfully running the ctrees.

#below is the exmaple code of ctree.
data('ctree_input')

x = ctrees(
   ctree_input$CCF_clusters,
   ctree_input$drivers,
   ctree_input$samples,
   ctree_input$patient,
   ctree_input$sspace.cutoff,
   ctree_input$n.sampling,
   ctree_input$store.max
   )
#there is no error when running this code, but the x is NULL, without any output. 
  
print(x[[1]]) 
#NULL
plot(x[[1]])
#error because of NULL

Any further modification will be appreciated.

Best,

Qingjian Chen
Sun Yat-Sen Univeristy Cancer Center