Use pip to install the required files:

pip install -r requirements.txt
pip install git+https://github.com/elastic/ember.git
pip install -e asm2vec-pytorch

There are different pipelines to classify malware based on which type of binary wanna classify:

• PE
• ELF

In the first case the pipeline should be builded like follows:

1. Create the dataset using the preprocessing module, the schema of the dataset follows the BODMAS convention
2. Build a model using a supervised learning algorithm
3. Classify

If you are interested in classifying ELF binaries:

1. Use the asm2vec-pytorch module to build and train the NN following the well written doc
2. Extract the features with the script extract_vectors.py

$ python asm2vec-pytorch/scripts/extract_vectors.py -m mymodel.pt -o dataset.json 

3. You can use now the frequency_clusters module to classify the binaries specifying the configuration file

$ python unsupervised/frequency_clusters.py -cf example_settings.json

Where example_settings.json should be something like this:

{
    "dataset": "/path/to/your/dataset",
    "output_path": "example/",
    "binary2class": "/path/to/binary2class file", // this file should be a json file containing association of the form 
                                                  // "filename" : "malwareclass"
    "model": {
        "name": "KMeans",
        "params": {
            "n_clusters": 7
        }
    }
}

Note
If you want use the legacy mode you can omit the model specification in the configuration file

In case of supervised learning you could use the avclass package that helps you assign labels based on VT reports.
A quick example helps illustrating the labeling process:
With the help of the vt_report_adapter.py module you can generate a reports.json from all the vt reports inside the reports folder

$ python vt_report_adapter.py -i reports/

you can use this file as input for the avclass2_labeler.py module

$ python avclass/avclass2/avclass2_labeler.py -lb reports.json -p

the final output looks like this:

[-] 0 JSON readaca2d12934935b070df8f50e06a20539 75      CLASS:grayware|15,FILE:os:windows|13,CLASS:grayware:adware|11,FAM:adrotator|8
76c643bd32186c2c7cb1f52c38c07bb3        68      UNK:disabler|13,UNK:winreg|8,UNK:prova|4,FILE:os:windows|2
[-] 2 JSON read
[-] Samples: 2 NoScans: 0 NoTags: 0 GroundTruth: 0