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jse-2019-07-092

scripts and data for some phylogenetic post-run analyses

kevinloverde_udacityproject

My CS291 Final Project

kewhybseqworkshop

Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.

machine-learning-overview

Overview of different approaches for machine learning by Ben Kok on October 3rd, 2017

mammals

Scripts used in mammal paper

miao_05232017-uf_checkout

microsats_repeatfilter

mint_otl

plot mint tree from Open Tree of Life

newick_utils

shell tools for processing phylogenetic trees

niche-modeling-workshop

Niche-Modeling-Workshop

occurrence

Occurrence store, download, search

opentree

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

opentreeextractor_shiny

ordway_test

package-presentations

pbs_scripts

Sample submit scripts for the UF Research Computing cluster

pd_manuscript

phylo-tree

Create phylogenetics trees by xelatex/tikz/forest

phyloch

A git repository for Christoph Heibl phyloch R package

phylocom

Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic

phyloconverge

an algorithm to look for convergent signals in phylogenetic trees

phyloextra

Extra tools for phylogenetics that I have found to be extra helpful

phyloscripts

Helper scripts for processing and visualization of phylogenetics datasets

physcripts

Python scripts (and a few non-python) that have come in handy for various phylogenetics-related tasks

plantlist

Looking up APGIII Families for plant species and preparing taxa table for Phylomatic.

plottree

proble_-set_1.3

For each year gets the hottest temperature in August, creating a file with year and the highest temperature

progbio

Teaching materials for classes teaching programming to biologists

ps2

PS2-test created by GitHub Classroom

ps3