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byoo's Projects

adam icon adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

denovogear icon denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

gatk icon gatk

Official code repository for GATK versions 4 and up

socrates icon socrates

Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads

staar icon staar

An R package for performing STAAR procedure in whole-genome sequencing studies

staarpipeline-tutorial icon staarpipeline-tutorial

The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline and STAARpipelineSummary

vg icon vg

tools for working with genome variation graphs

wdl icon wdl

Workflow Description Language - Specification and Implementations

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